Species: Haemophilus haemolyticus (HMT-851)
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Prev - Prevalence
10thp - 10th percentile
90thp - 90th percentile
ND - less than 0.001%
Body Site Legend:
| SUBP-- Subgingival Plaque |
| SUPP -- Supragingival Plaque |
| PERIO -- Periodontal |
| AKE -- Attached Keratinized Gingiva |
| BMU -- Buccal Mucosa |
| HPA -- Hard Palate |
| SAL -- Saliva |
| THR -- Throat |
| PTO -- Palatine Tonsils |
| TDO -- Tongue Dorsum |
| ANA -- Anterior Nares |
| LRC -- L_Retroauricular Crease |
| RRC -- R_Retroauricular Crease |
| LAF -- L_Antecubital Fossa |
| RAF -- R_Antecubital Fossa |
| VIN -- Vaginal Introitus |
| MVA -- Mid Vagina |
| PFO -- Posterior Fornix |
| STO -- Stool |
Prev - Prevalence
10thp - 10th percentile
90thp - 90th percentile
ND - less than 0.001%
Eren V1-V3 www.pnas.org
(data from healthy subjects)
No Notes
| SUBP | SUPP | AKE | BMU | HPA | SAL | THR | PTO | TDO | STO | |
|---|---|---|---|---|---|---|---|---|---|---|
| Avg (%) | 0.014 | 0.007 | 0.558 | 0.259 | 0.069 | 0.068 | 0.116 | 0.099 | 0.006 | 0.000 |
| 10thp | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| 90thp | 0.010 | 0.027 | 1.478 | 0.867 | 0.146 | 0.138 | 0.104 | 0.094 | 0.000 | 0.000 |
| Stdev | 0.088 | 0.021 | 1.297 | 0.591 | 0.300 | 0.215 | 0.546 | 0.574 | 0.024 | 0.000 |
| Prev(%) | 10.390 | 14.286 | 58.442 | 59.740 | 29.870 | 32.468 | 35.065 | 29.870 | 9.091 | 0.000 |
Eren V3-V5 www.pnas.org
(data from healthy subjects)
Notes:
Reads equally close to H. haemolyticus and H. sp. HMT 908 were assigned half to each taxon.
Reads equally close to H. haemolyticus, H. sp. HMT 908, and Aggregatibacter sp. HMT 898 were assigned one-third to each taxon.
Reads equally close to H. haemolyticus and H. sp. HMT 908 were assigned half to each taxon.
Reads equally close to H. haemolyticus, H. sp. HMT 908, and Aggregatibacter sp. HMT 898 were assigned one-third to each taxon.
| SUBP | SUPP | AKE | BMU | HPA | SAL | THR | PTO | TDO | STO | |
|---|---|---|---|---|---|---|---|---|---|---|
| Avg (%) | 0.092 | 0.106 | 3.534 | 1.427 | 0.334 | 0.391 | 0.260 | 0.332 | 0.021 | 0.000 |
| 10thp | 0.000 | 0.000 | 0.173 | 0.033 | 0.000 | 0.010 | 0.000 | 0.000 | 0.000 | 0.000 |
| 90thp | 0.205 | 0.220 | 10.109 | 3.877 | 0.721 | 1.004 | 0.651 | 0.620 | 0.051 | 0.000 |
| Stdev | 0.260 | 0.330 | 4.592 | 2.094 | 0.582 | 0.463 | 0.705 | 0.928 | 0.043 | 0.000 |
| Prev(%) | 61.486 | 57.432 | 95.946 | 93.243 | 87.162 | 89.865 | 76.351 | 81.757 | 45.946 | 0.699 |
Human Microbiome Project 16S RefSeq (V1-V3) (not published)
(data from healthy subjects)
Notes:
Reads equidistant to HMT-036 and HMT-851 were assigned to each taxon in proportion to the abundance of HMT-036 and HMT-851 individually at these sites (AKE,BMU).
Some of the reads equidistant from these taxa (058-070-071-073-398-423-431-638-677-707-734-851) are included in HMT-851 because they are too close to differentiate at this site (AKE).
Reads equidistant to HMT-734 and HMT-851 were assigned to each taxon in proportion to the abundance of HMT-734 and HMT-851 individually at this body site (THR).
Reads equidistant to HMT-036 and HMT-851 were assigned to each taxon in proportion to the abundance of HMT-036 and HMT-851 individually at these sites (AKE,BMU).
Some of the reads equidistant from these taxa (058-070-071-073-398-423-431-638-677-707-734-851) are included in HMT-851 because they are too close to differentiate at this site (AKE).
Reads equidistant to HMT-734 and HMT-851 were assigned to each taxon in proportion to the abundance of HMT-734 and HMT-851 individually at this body site (THR).
| SUBP | SUPP | AKE | BMU | HPA | SAL | THR | PTO | TDO | ANA | LRC | RRC | LAF | RAF | VIN | MVA | PFO | STO | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Avg (%) | 0.046 | 0.000 | 2.107 | 0.872 | 0.169 | 0.184 | 0.160 | 0.129 | 0.000 | 0.000 | 0.026 | 0.025 | 0.096 | 0.071 | 0.000 | 0.000 | 0.000 | 0.000 |
| 10thp | 0.000 | 0.000 | 0.017 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| 90thp | 0.086 | 0.000 | 5.910 | 2.755 | 0.431 | 0.485 | 0.182 | 0.215 | 0.000 | 0.000 | 0.026 | 0.042 | 0.291 | 0.218 | 0.000 | 0.000 | 0.000 | 0.000 |
| Stdev | 0.144 | 0.000 | 3.447 | 1.547 | 0.342 | 0.387 | 0.906 | 0.423 | 0.000 | 0.000 | 0.119 | 0.114 | 0.321 | 0.235 | 0.000 | 0.000 | 0.000 | 0.000 |
| Prev(%) | 39.735 | 0.000 | 98.601 | 82.192 | 75.168 | 64.615 | 53.869 | 52.667 | 0.000 | 0.000 | 15.805 | 23.229 | 29.310 | 29.954 | 0.000 | 0.000 | 0.000 | 0.000 |
Human Microbiome Project 16S RefSeq (V3-V5) (not published)
(data from healthy subjects)
Notes:
No data – the v3v5 region of the 16S rRNA gene does not distinguish this species from its close relatives.
No data – the v3v5 region of the 16S rRNA gene does not distinguish this species from its close relatives.
Dewhirst (35x9) (not published)
Notes:
Reads equally close to HMT 036 and 851 were assigned half to each taxon.
Reads equally close to HMT 259 and 851 were assigned half to each taxon.
Reads equally close to HMT 036, 851, and 908 were assigned one-third to each taxon.
Reads equally close to HMT 036 and 851 were assigned half to each taxon.
Reads equally close to HMT 259 and 851 were assigned half to each taxon.
Reads equally close to HMT 036, 851, and 908 were assigned one-third to each taxon.
| SUBP | SUPP | AKE | BMU | HPA | SAL | THR | PTO | TDO | ANA | |
|---|---|---|---|---|---|---|---|---|---|---|
| Avg (%) | 0.016 | 0.046 | 1.639 | 0.237 | 0.063 | 0.028 | 0.042 | 0.074 | 0.235 | 0.001 |
| 10thp | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| 90thp | 0.038 | 0.019 | 3.490 | 0.415 | 0.124 | 0.089 | 0.045 | 0.157 | 0.212 | 0.000 |
| Stdev | 0.056 | 0.216 | 4.504 | 0.614 | 0.104 | 0.067 | 0.140 | 0.182 | 1.052 | 0.003 |
| Prev(%) | 47.297 | 44.118 | 79.070 | 77.143 | 78.571 | 50.000 | 57.576 | 45.161 | 45.000 | 5.000 |
Human Microbiome Project Metaphlan (not published)
(data from healthy subjects)
No Notes
| SUBP | SUPP | PERIO | AKE | BMU | HPA | SAL | THR | PTO | TDO | ANA | LRC | RRC | RAF | VIN | MVA | PFO | STO | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Avg (%) | 0.095 | 0.210 | 0.000 | 8.172 | 8.606 | 8.020 | 1.278 | 0.030 | 0.976 | 0.044 | 0.017 | 0.005 | 0.108 | 0.000 | 0.000 | 0.039 | 0.001 | 0.001 |
| 10thp | 0.000 | 0.000 | 0.000 | 0.248 | 0.090 | 8.020 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| 90thp | 0.238 | 0.625 | 0.000 | 26.910 | 21.875 | 8.020 | 3.416 | 0.100 | 1.746 | 0.105 | 0.000 | 0.021 | 0.000 | 0.000 | 0.000 | 0.133 | 0.000 | 0.000 |
| Stdev | 0.127 | 0.521 | 0.000 | 10.684 | 11.469 | 0.000 | 1.521 | 0.043 | 2.158 | 0.112 | 0.163 | 0.013 | 0.603 | 0.000 | 0.000 | 0.103 | 0.006 | 0.014 |
| Prev(%) | 66.667 | 72.727 | 0.000 | 94.118 | 94.149 | 100.000 | 75.000 | 43.750 | 80.000 | 52.347 | 3.153 | 12.500 | 6.250 | 0.000 | 0.000 | 14.286 | 1.010 | 0.364 |
