HOMD ::Species:Porphyromonas catoniae

Species: Porphyromonas catoniae (HMT-283)

Full Lineage: Bacteria; Bacteroidota; Bacteroidia; Bacteroidales; Porphyromonadaceae; Porphyromonas; Porphyromonas catoniae Each rank name is a link to abundance plots at that rank:

LINKS: Ecology Home | HMT-283: Body Sites Data | HMT-283: Taxon Description | Life Page: Porphyromonas catoniae

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Oral:

SUBP-- Subgingival Plaque

SUPP -- Supragingival Plaque

PERIO -- Periodontal

AKE -- Attached Keratinized Gingiva

BMU -- Buccal Mucosa

HPA -- Hard Palate

SAL -- Saliva

THR -- Throat

PTO -- Palatine Tonsils

TDO -- Tongue Dorsum

Nasal:

ANA -- Anterior Nares

Skin:

LRC -- L_Retroauricular Crease

RRC -- R_Retroauricular Crease

LAF -- L_Antecubital Fossa

RAF -- R_Antecubital Fossa

Vaginal:

VIN -- Vaginal Introitus

MVA -- Mid Vagina

PFO -- Posterior Fornix

Gut:

STO -- Stool

Prev - Prevalence
10^thp - 10^th percentile
90^thp - 90^th percentile
ND - less than 0.001%

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HMP 16S RefSeq (V1-V3) (not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	0.799	0.774	0.098	0.059	0.032	0.184	0.012	0.000	0.000	0.000	0.013	0.004	0.015	0.018	0.000	0.000	0.000	0.000
10^thp	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
90^thp	2.298	2.398	0.149	0.136	0.066	0.527	0.014	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
Stdev	1.278	1.261	0.470	0.139	0.158	0.338	0.130	0.000	0.000	0.000	0.117	0.036	0.093	0.107	0.000	0.000	0.000	0.000
Prev(%)	76.159	81.457	36.364	58.219	41.611	64.615	13.095	0.000	0.000	0.000	7.184	6.516	7.471	6.912	0.000	0.000	0.000	0.000

HMP 16S RefSeq (V3-V5) (not published)

** View Notes (mouse over) **

Notes:
No data – the v3v5 region of the 16S rRNA gene does not distinguish this species from its close relatives.

Dewhirst (35x9) (not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA
Avg (%)	0.205	0.377	0.029	0.043	0.049	0.050	0.011	0.018	0.008	0.000
10^thp	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
90^thp	0.386	1.209	0.069	0.076	0.088	0.145	0.024	0.045	0.027	0.000
Stdev	0.557	0.826	0.066	0.138	0.133	0.096	0.020	0.041	0.018	0.000
Prev(%)	64.865	79.412	65.116	71.429	75.000	80.000	54.545	64.516	50.000	0.000

HMP Metaphlan (not published)

No Notes

	SUBP	SUPP	PERIO	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	RAF	VIN	MVA	PFO	STO
Avg (%)	0.756	0.457	0.075	0.013	0.035	0.000	0.349	0.001	0.000	0.003	0.000	0.000	0.006	0.000	0.000	0.002	0.000	0.000
10^thp	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
90^thp	2.237	1.275	0.289	0.020	0.060	0.000	0.817	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
Stdev	0.892	0.751	0.150	0.042	0.142	0.000	0.387	0.003	0.002	0.015	0.000	0.000	0.034	0.000	0.000	0.008	0.000	0.000
Prev(%)	75.000	69.444	25.000	11.765	21.809	0.000	62.500	6.250	4.000	8.216	0.000	0.000	3.125	0.000	0.000	7.143	0.000	0.182

Eren V1-V3 www.pnas.org

No Notes

Eren V3-V5 www.pnas.org

** View Notes (mouse over) **

Notes:
Reads equally close to P. catoniae and P. sp. HMT 275, 277, and 284 were assigned one-fourth to each taxon.

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	0.337	0.375	0.158	0.058	0.019	0.098	0.012	0.023	0.004	0.000
10^thp	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
90^thp	0.893	1.056	0.442	0.129	0.043	0.262	0.028	0.047	0.012	0.000
Stdev	0.471	0.460	0.351	0.165	0.038	0.118	0.032	0.064	0.011	0.000
Prev(%)	81.757	87.162	58.784	69.595	62.162	85.135	37.162	49.324	30.405	0.699

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