Genome Explorer: Agrobacterium tumefaciens F2 (SEQF2035.2)
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PROKKA Annotation for SEQF2035.2
| Genome selected: Agrobacterium tumefaciens F2 | |||
| Contigs: | 8 | Bases: | 5465705 bps |
| CDS: | 5103 | rRNA: | 12 |
| tmRNA: | 1 | tRNA: | 53 |
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| # | Molecule | PID | NA (Length)(Seq) |
AA (Length)(Seq) |
Range | Gene | Gene Product |
|---|---|---|---|---|---|---|---|
| 5001 | SEQF2035.2_AFSD01000008.1 | SEQF2035.2_05124 JB | 723 [NA] | 240 [AA] | 287504-288226 | hypothetical protein | |
| 5002 | SEQF2035.2_AFSD01000008.1 | SEQF2035.2_05125 JB | 300 [NA] | 99 [AA] | 288507-288806 | traM_2 | Transcriptional repressor TraM |
| 5003 | SEQF2035.2_AFSD01000008.1 | SEQF2035.2_05126 JB | 705 [NA] | 234 [AA] | 288817-289521 | traR_2 | Transcriptional activator protein TraR |
| 5004 | SEQF2035.2_AFSD01000008.1 | SEQF2035.2_05127 JB | 615 [NA] | 204 [AA] | 289790-290404 | hypothetical protein | |
| 5005 | SEQF2035.2_AFSD01000008.1 | SEQF2035.2_05128 JB | 387 [NA] | 128 [AA] | 290418-290804 | hypothetical protein | |
| 5006 | SEQF2035.2_AFSD01000008.1 | SEQF2035.2_05129 JB | 621 [NA] | 206 [AA] | 290956-291576 | hypothetical protein | |
| 5007 | SEQF2035.2_AFSD01000008.1 | SEQF2035.2_05131 JB | 555 [NA] | 184 [AA] | 291577-292131 | hypothetical protein | |
| 5008 | SEQF2035.2_AFSD01000008.1 | SEQF2035.2_05132 JB | 3312 [NA] | 1103 [AA] | 292128-295439 | recD2_4 | ATP-dependent RecD-like DNA helicase |
| 5009 | SEQF2035.2_AFSD01000008.1 | SEQF2035.2_05133 JB | 273 [NA] | 90 [AA] | 295693-295965 | hypothetical protein | |
| 5010 | SEQF2035.2_AFSD01000008.1 | SEQF2035.2_05134 JB | 213 [NA] | 70 [AA] | 295970-296182 | hypothetical protein | |
| 5011 | SEQF2035.2_AFSD01000008.1 | SEQF2035.2_05135 JB | 1962 [NA] | 653 [AA] | 296172-298133 | hypothetical protein | |
| 5012 | SEQF2035.2_AFSD01000008.1 | SEQF2035.2_05136 JB | 2865 [NA] | 954 [AA] | 298696-301560 | hypothetical protein | |
| 5013 | SEQF2035.2_AFSD01000008.1 | SEQF2035.2_05137 JB | 1098 [NA] | 365 [AA] | 301575-302672 | hypothetical protein | |
| 5014 | SEQF2035.2_AFSD01000008.1 | SEQF2035.2_05138 JB | 258 [NA] | 85 [AA] | 302918-303175 | hypothetical protein | |
| 5015 | SEQF2035.2_AFSD01000008.1 | SEQF2035.2_05139 JB | 852 [NA] | 283 [AA] | 303401-304252 | pcm_3 | Protein-L-isoaspartate O-methyltransferase |
| 5016 | SEQF2035.2_AFSD01000008.1 | SEQF2035.2_05140 JB | 873 [NA] | 290 [AA] | 304510-305382 | hypothetical protein | |
| 5017 | SEQF2035.2_AFSD01000008.1 | SEQF2035.2_05141 JB | 846 [NA] | 281 [AA] | 305485-306330 | hypothetical protein | |
| 5018 | SEQF2035.2_AFSD01000008.1 | SEQF2035.2_05142 JB | 771 [NA] | 256 [AA] | 306481-307251 | hypothetical protein | |
| 5019 | SEQF2035.2_AFSD01000008.1 | SEQF2035.2_05143 JB | 672 [NA] | 223 [AA] | 307613-308284 | mtgA_4 | Biosynthetic peptidoglycan transglycosylase |
| 5020 | SEQF2035.2_AFSD01000008.1 | SEQF2035.2_05144 JB | 798 [NA] | 265 [AA] | 308439-309236 | bla_2 | Beta-lactamase OXA-18 |
| 5021 | SEQF2035.2_AFSD01000008.1 | SEQF2035.2_05145 JB | 756 [NA] | 251 [AA] | 309264-310019 | hypothetical protein | |
| 5022 | SEQF2035.2_AFSD01000008.1 | SEQF2035.2_05146 JB | 312 [NA] | 103 [AA] | 310273-310584 | hypothetical protein | |
| 5023 | SEQF2035.2_AFSD01000008.1 | SEQF2035.2_05147 JB | 486 [NA] | 161 [AA] | 311203-311688 | hypothetical protein | |
| 5024 | SEQF2035.2_AFSD01000008.1 | SEQF2035.2_05148 JB | 174 [NA] | 57 [AA] | 311711-311884 | hypothetical protein | |
| 5025 | SEQF2035.2_AFSD01000008.1 | SEQF2035.2_05149 JB | 312 [NA] | 103 [AA] | 312341-312652 | hypothetical protein | |
| 5026 | SEQF2035.2_AFSD01000008.1 | SEQF2035.2_05150 JB | 927 [NA] | 308 [AA] | 313296-314222 | traC_3 | DNA primase TraC |
| 5027 | SEQF2035.2_AFSD01000008.1 | SEQF2035.2_05151 JB | 588 [NA] | 195 [AA] | 314524-315111 | hypothetical protein | |
| 5028 | SEQF2035.2_AFSD01000008.1 | SEQF2035.2_05152 JB | 1725 [NA] | 574 [AA] | 316297-318021 | noc_7 | Nucleoid occlusion protein |
| 5029 | SEQF2035.2_AFSD01000008.1 | SEQF2035.2_05153 JB | 1083 [NA] | 360 [AA] | 318498-319580 | ftsH_6 | ATP-dependent zinc metalloprotease FtsH |
| 5030 | SEQF2035.2_AFSD01000008.1 | SEQF2035.2_05154 JB | 2286 [NA] | 761 [AA] | 319642-321927 | hypothetical protein | |
| 5031 | SEQF2035.2_AFSD01000008.1 | SEQF2035.2_05156 JB | 5094 [NA] | 1697 [AA] | 322115-327208 | hypothetical protein | |
| 5032 | SEQF2035.2_AFSD01000008.1 | SEQF2035.2_05157 JB | 603 [NA] | 200 [AA] | 327299-327901 | hypothetical protein | |
| 5033 | SEQF2035.2_AFSD01000008.1 | SEQF2035.2_05158 JB | 969 [NA] | 322 [AA] | 328025-328993 | hypothetical protein | |
| 5034 | SEQF2035.2_AFSD01000008.1 | SEQF2035.2_05159 JB | 177 [NA] | 58 [AA] | 329184-329360 | hypothetical protein | |
| 5035 | SEQF2035.2_AFSD01000008.1 | SEQF2035.2_05160 JB | 672 [NA] | 223 [AA] | 329598-330269 | hypothetical protein | |
| 5036 | SEQF2035.2_AFSD01000008.1 | SEQF2035.2_05161 JB | 348 [NA] | 115 [AA] | 330429-330776 | hypothetical protein | |
| 5037 | SEQF2035.2_AFSD01000008.1 | SEQF2035.2_05162 JB | 234 [NA] | 77 [AA] | 330789-331022 | hypothetical protein | |
| 5038 | SEQF2035.2_AFSD01000008.1 | SEQF2035.2_05163 JB | 747 [NA] | 248 [AA] | 331319-332065 | COQ5_7 | 2-methoxy-6-polyprenyl-1%2C4-benzoquinol methylase%2C mitochondrial |
| 5039 | SEQF2035.2_AFSD01000008.1 | SEQF2035.2_05164 JB | 714 [NA] | 237 [AA] | 332183-332896 | hypothetical protein | |
| 5040 | SEQF2035.2_AFSD01000008.1 | SEQF2035.2_05165 JB | 711 [NA] | 236 [AA] | 333154-333864 | rspR_5 | HTH-type transcriptional repressor RspR |
| 5041 | SEQF2035.2_AFSD01000008.1 | SEQF2035.2_05166 JB | 912 [NA] | 303 [AA] | 333861-334772 | dapA_6 | 4-hydroxy-tetrahydrodipicolinate synthase |
| 5042 | SEQF2035.2_AFSD01000008.1 | SEQF2035.2_05167 JB | 1518 [NA] | 505 [AA] | 334765-336282 | puuC_2 | NADPNAD-dependent aldehyde dehydrogenase PuuC |
| 5043 | SEQF2035.2_AFSD01000008.1 | SEQF2035.2_05168 JB | 1347 [NA] | 448 [AA] | 336279-337625 | mnmC_4 | tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC |
| 5044 | SEQF2035.2_AFSD01000008.1 | SEQF2035.2_05169 JB | 852 [NA] | 283 [AA] | 337703-338554 | hypothetical protein | |
| 5045 | SEQF2035.2_AFSD01000008.1 | SEQF2035.2_05170 JB | 1092 [NA] | 363 [AA] | 338645-339736 | proV | Glycine betaineproline betaine transport system ATP-binding protein ProV |
| 5046 | SEQF2035.2_AFSD01000008.1 | SEQF2035.2_05171 JB | 852 [NA] | 283 [AA] | 339744-340595 | opuAB_2 | Glycine betaine transport system permease protein OpuAB |
| 5047 | SEQF2035.2_AFSD01000008.1 | SEQF2035.2_05172 JB | 855 [NA] | 284 [AA] | 340595-341449 | opuAB_3 | Glycine betaine transport system permease protein OpuAB |
| 5048 | SEQF2035.2_AFSD01000008.1 | SEQF2035.2_05173 JB | 999 [NA] | 332 [AA] | 341471-342469 | 4-hydroxyproline 2-epimerase 2 | |
| 5049 | SEQF2035.2_AFSD01000008.1 | SEQF2035.2_05174 JB | 981 [NA] | 326 [AA] | 342493-343473 | cdhR_4 | HTH-type transcriptional regulator CdhR |
| 5050 | SEQF2035.2_AFSD01000008.1 | SEQF2035.2_05175 JB | 735 [NA] | 244 [AA] | 343599-344333 | IS21 family transposase ISPkr1 | |
| 5051 | SEQF2035.2_AFSD01000008.1 | SEQF2035.2_05176 JB | 1500 [NA] | 499 [AA] | 344335-345834 | hypothetical protein | |
| 5052 | SEQF2035.2_AFSD01000008.1 | SEQF2035.2_05177 JB | 279 [NA] | 92 [AA] | 346047-346325 | hypothetical protein | |
| 5053 | SEQF2035.2_AFSD01000008.1 | SEQF2035.2_05178 JB | 318 [NA] | 105 [AA] | 347054-347371 | hypothetical protein | |
| 5054 | SEQF2035.2_AFSD01000008.1 | SEQF2035.2_05179 JB | 702 [NA] | 233 [AA] | 347462-348163 | hypothetical protein | |
| 5055 | SEQF2035.2_AFSD01000008.1 | SEQF2035.2_05180 JB | 741 [NA] | 246 [AA] | 348346-349086 | vjbR | HTH-type quorum sensing-dependent transcriptional regulator VjbR |
| 5056 | SEQF2035.2_AFSD01000008.1 | SEQF2035.2_05181 JB | 381 [NA] | 126 [AA] | 349464-349844 | hypothetical protein | |
| 5057 | SEQF2035.2_AFSD01000008.1 | SEQF2035.2_05182 JB | 861 [NA] | 286 [AA] | 349850-350710 | hypothetical protein | |
| 5058 | SEQF2035.2_AFSD01000008.1 | SEQF2035.2_05183 JB | 402 [NA] | 133 [AA] | 350846-351247 | hypothetical protein | |
| 5059 | SEQF2035.2_AFSD01000008.1 | SEQF2035.2_05184 JB | 483 [NA] | 160 [AA] | 351286-351768 | hypothetical protein | |
| 5060 | SEQF2035.2_AFSD01000008.1 | SEQF2035.2_05185 JB | 1128 [NA] | 375 [AA] | 351982-353109 | hypothetical protein | |
| 5061 | SEQF2035.2_AFSD01000008.1 | SEQF2035.2_05186 JB | 96 [NA] | 31 [AA] | 353421-353516 | hypothetical protein | |
| 5062 | SEQF2035.2_AFSD01000008.1 | SEQF2035.2_05187 JB | 138 [NA] | 45 [AA] | 353528-353665 | hypothetical protein | |
| 5063 | SEQF2035.2_AFSD01000008.1 | SEQF2035.2_05188 JB | 3129 [NA] | 1042 [AA] | 353662-356790 | mdtC_3 | Multidrug resistance protein MdtC |
| 5064 | SEQF2035.2_AFSD01000008.1 | SEQF2035.2_05189 JB | 1080 [NA] | 359 [AA] | 356790-357869 | cnrB | Nickel and cobalt resistance protein CnrB |
| 5065 | SEQF2035.2_AFSD01000008.1 | SEQF2035.2_05190 JB | 516 [NA] | 171 [AA] | 357933-358448 | hypothetical protein | |
| 5066 | SEQF2035.2_AFSD01000008.1 | SEQF2035.2_05191 JB | 354 [NA] | 117 [AA] | 358663-359016 | hypothetical protein | |
| 5067 | SEQF2035.2_AFSD01000008.1 | SEQF2035.2_05192 JB | 402 [NA] | 133 [AA] | 359930-360331 | yabJ_2 | 2-iminobutanoate2-iminopropanoate deaminase |
| 5068 | SEQF2035.2_AFSD01000008.1 | SEQF2035.2_05193 JB | 942 [NA] | 313 [AA] | 360331-361272 | hypothetical protein | |
| 5069 | SEQF2035.2_AFSD01000008.1 | SEQF2035.2_05194 JB | 852 [NA] | 283 [AA] | 361332-362183 | mftE_2 | Putative mycofactocin system creatinine amidohydrolase family protein MftE |
| 5070 | SEQF2035.2_AFSD01000008.1 | SEQF2035.2_05195 JB | 1365 [NA] | 454 [AA] | 362180-363544 | hypothetical protein | |
| 5071 | SEQF2035.2_AFSD01000008.1 | SEQF2035.2_05196 JB | 975 [NA] | 324 [AA] | 363574-364548 | hypothetical protein | |
| 5072 | SEQF2035.2_AFSD01000008.1 | SEQF2035.2_05197 JB | 852 [NA] | 283 [AA] | 364575-365426 | ribX_4 | Riboflavin transport system permease protein RibX |
| 5073 | SEQF2035.2_AFSD01000008.1 | SEQF2035.2_05198 JB | 843 [NA] | 280 [AA] | 365423-366265 | cmpC_3 | Bicarbonate transport ATP-binding protein CmpC |
| 5074 | SEQF2035.2_AFSD01000008.1 | SEQF2035.2_05199 JB | 996 [NA] | 331 [AA] | 366285-367280 | vldW | Validamycin A dioxygenase |
| 5075 | SEQF2035.2_AFSD01000008.1 | SEQF2035.2_05200 JB | 1611 [NA] | 536 [AA] | 367505-369115 | araB_3 | Ribulokinase |
| 5076 | SEQF2035.2_AFSD01000008.1 | SEQF2035.2_05201 JB | 894 [NA] | 297 [AA] | 369128-370021 | hypothetical protein | |
| 5077 | SEQF2035.2_AFSD01000008.1 | SEQF2035.2_05202 JB | 444 [NA] | 147 [AA] | 370018-370461 | hypothetical protein | |
| 5078 | SEQF2035.2_AFSD01000008.1 | SEQF2035.2_05203 JB | 768 [NA] | 255 [AA] | 370485-371252 | frcA_3 | Fructose import ATP-binding protein FrcA |
| 5079 | SEQF2035.2_AFSD01000008.1 | SEQF2035.2_05204 JB | 1029 [NA] | 342 [AA] | 371249-372277 | alsC_2 | D-allose transport system permease protein AlsC |
| 5080 | SEQF2035.2_AFSD01000008.1 | SEQF2035.2_05205 JB | 972 [NA] | 323 [AA] | 372332-373303 | rbsB_3 | Ribose import binding protein RbsB |
| 5081 | SEQF2035.2_AFSD01000008.1 | SEQF2035.2_05206 JB | 1281 [NA] | 426 [AA] | 373481-374761 | mlc_1 | Protein mlc |
| 5082 | SEQF2035.2_AFSD01000008.1 | SEQF2035.2_05207 JB | 996 [NA] | 331 [AA] | 374899-375894 | hypothetical protein | |
| 5083 | SEQF2035.2_AFSD01000008.1 | SEQF2035.2_05208 JB | 3066 [NA] | 1021 [AA] | 376092-379157 | swrC_2 | Swarming motility protein SwrC |
| 5084 | SEQF2035.2_AFSD01000008.1 | SEQF2035.2_05209 JB | 1086 [NA] | 361 [AA] | 379154-380239 | mdtE_2 | Multidrug resistance protein MdtE |
| 5085 | SEQF2035.2_AFSD01000008.1 | SEQF2035.2_05210 JB | 1071 [NA] | 356 [AA] | 380236-381306 | mdtA_7 | Multidrug resistance protein MdtA |
| 5086 | SEQF2035.2_AFSD01000008.1 | SEQF2035.2_05211 JB | 405 [NA] | 134 [AA] | 381444-381848 | hypothetical protein | |
| 5087 | SEQF2035.2_AFSD01000008.1 | SEQF2035.2_05212 JB | 735 [NA] | 244 [AA] | 381981-382715 | hypothetical protein | |
| 5088 | SEQF2035.2_AFSD01000008.1 | SEQF2035.2_05213 JB | 645 [NA] | 214 [AA] | 382902-383546 | hypothetical protein | |
| 5089 | SEQF2035.2_AFSD01000008.1 | SEQF2035.2_05214 JB | 324 [NA] | 107 [AA] | 383630-383953 | hypothetical protein | |
| 5090 | SEQF2035.2_AFSD01000008.1 | SEQF2035.2_05215 JB | 471 [NA] | 156 [AA] | 385017-385487 | hypothetical protein | |
| 5091 | SEQF2035.2_AFSD01000008.1 | SEQF2035.2_05216 JB | 654 [NA] | 217 [AA] | 385499-386152 | hypothetical protein | |
| 5092 | SEQF2035.2_AFSD01000008.1 | SEQF2035.2_05217 JB | 1263 [NA] | 420 [AA] | 386502-387764 | hypothetical protein | |
| 5093 | SEQF2035.2_AFSD01000008.1 | SEQF2035.2_05218 JB | 882 [NA] | 293 [AA] | 387828-388709 | melD_6 | Melibioseraffinosestachyose import permease protein MelD |
| 5094 | SEQF2035.2_AFSD01000008.1 | SEQF2035.2_05219 JB | 852 [NA] | 283 [AA] | 388714-389565 | araQ_7 | L-arabinose transport system permease protein AraQ |
| 5095 | SEQF2035.2_AFSD01000008.1 | SEQF2035.2_05220 JB | 1203 [NA] | 400 [AA] | 389562-390764 | malK_13 | Maltosemaltodextrin import ATP-binding protein MalK |
| 5096 | SEQF2035.2_AFSD01000008.1 | SEQF2035.2_05221 JB | 2139 [NA] | 712 [AA] | 390782-392920 | bgaA | Beta-galactosidase BgaA |
| 5097 | SEQF2035.2_AFSD01000008.1 | SEQF2035.2_05222 JB | 1224 [NA] | 407 [AA] | 393005-394228 | mlc_2 | Protein mlc |
| 5098 | SEQF2035.2_AFSD01000008.1 | SEQF2035.2_05223 JB | 429 [NA] | 142 [AA] | 394486-394914 | hypothetical protein | |
| 5099 | SEQF2035.2_AFSD01000008.1 | SEQF2035.2_05224 JB | 1380 [NA] | 459 [AA] | 395058-396437 | hmgA | Homogentisate 1%2C2-dioxygenase |
| 5100 | SEQF2035.2_AFSD01000008.1 | SEQF2035.2_05225 JB | 1209 [NA] | 402 [AA] | 396504-397712 | hypothetical protein | |
| 5101 | SEQF2035.2_AFSD01000008.1 | SEQF2035.2_05226 JB | 630 [NA] | 209 [AA] | 397709-398338 | nagL | Maleylpyruvate isomerase |
| 5102 | SEQF2035.2_AFSD01000008.1 | SEQF2035.2_05227 JB | 1293 [NA] | 430 [AA] | 398992-400284 | Tn3 family transposase ISAli20 | |
| 5103 | SEQF2035.2_AFSD01000008.1 | SEQF2035.2_05228 JB | 1509 [NA] | 502 [AA] | 400460-401968 | Tn3 family transposase ISAzs17 |