HOMD ::Species:Actinomyces naeslundii

Species: Actinomyces naeslundii (HMT-176)

Full Lineage: Bacteria; Actinomycetota; Actinomycetes; Actinomycetales; Actinomycetaceae; Actinomyces; Actinomyces naeslundii Each rank name is a link to abundance plots at that rank:

LINKS: Ecology Home | HMT-176: Body Sites Data | HMT-176: Taxon Description | Life Page: Actinomyces naeslundii

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Oral:

SUBP-- Subgingival Plaque

SUPP -- Supragingival Plaque

PERIO -- Periodontal

AKE -- Attached Keratinized Gingiva

BMU -- Buccal Mucosa

HPA -- Hard Palate

SAL -- Saliva

THR -- Throat

PTO -- Palatine Tonsils

TDO -- Tongue Dorsum

Nasal:

ANA -- Anterior Nares

Skin:

LRC -- L_Retroauricular Crease

RRC -- R_Retroauricular Crease

LAF -- L_Antecubital Fossa

RAF -- R_Antecubital Fossa

Vaginal:

VIN -- Vaginal Introitus

MVA -- Mid Vagina

PFO -- Posterior Fornix

Gut:

STO -- Stool

Prev - Prevalence
10^thp - 10^th percentile
90^thp - 90^th percentile
ND - less than 0.001%

Show Legend

Eren V1-V3 www.pnas.org (data from healthy subjects)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	1.008	0.958	0.014	0.070	0.028	0.057	0.020	0.012	0.003	0.001
10^thp	0.028	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
90^thp	2.542	2.138	0.044	0.182	0.078	0.140	0.039	0.047	0.014	0.000
Stdev	1.084	1.107	0.029	0.141	0.051	0.151	0.077	0.026	0.012	0.004
Prev(%)	90.909	85.714	28.571	61.039	41.558	44.156	25.974	28.571	11.688	2.597

Eren V3-V5 www.pnas.org (data from healthy subjects)

Notes:
Reads equally close to A. naeslundii, A. sp. HMT 170, and A. sp. HMT 171 were assigned one-third to each taxon.

Reads equally close to A. naeslundii, A. oris, and A. sp. HMT 169, 170, 171, and 175 were divided equally among taxa.

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	0.691	0.807	0.033	0.139	0.036	0.033	0.022	0.018	0.004	0.000
10^thp	0.036	0.086	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
90^thp	1.692	1.782	0.067	0.303	0.067	0.085	0.038	0.028	0.011	0.000
Stdev	1.102	1.042	0.088	0.301	0.132	0.039	0.091	0.115	0.010	0.001
Prev(%)	97.297	97.973	50.676	83.784	76.351	80.405	54.054	42.568	33.784	2.098

Human Microbiome Project 16S RefSeq (V1-V3) (not published) (data from healthy subjects)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	1.285	1.357	0.043	0.047	0.032	0.000	0.056	0.000	0.000	0.000	0.088	0.000	0.064	0.088	0.000	0.000	0.000	0.000
10^thp	0.021	0.009	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
90^thp	3.346	3.229	0.082	0.116	0.076	0.000	0.040	0.000	0.000	0.000	0.125	0.000	0.199	0.291	0.000	0.000	0.000	0.000
Stdev	1.799	2.322	0.142	0.102	0.081	0.000	0.726	0.000	0.000	0.000	0.516	0.000	0.205	0.256	0.000	0.000	0.000	0.000
Prev(%)	90.728	91.391	39.860	61.644	48.993	0.000	26.488	0.000	0.000	0.000	39.943	0.000	33.333	26.267	0.000	0.000	0.000	0.000

Human Microbiome Project 16S RefSeq (V3-V5) (not published) (data from healthy subjects)

Notes:
Reads equidistant to HMT-176 and HMT-893 were assigned to each taxon in proportion to the abundance of HMT-176 and HMT-893 individually at this body site (SUBP).

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	0.960	0.849	0.105	0.102	0.000	0.000	0.000	0.000	0.000	0.000	0.073	0.000	0.000	0.094	0.000	0.000	0.000	0.000
10^thp	0.107	0.090	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
90^thp	2.160	1.902	0.236	0.256	0.000	0.000	0.000	0.000	0.000	0.000	0.072	0.000	0.000	0.153	0.000	0.000	0.000	0.000
Stdev	1.221	1.189	0.318	0.234	0.000	0.000	0.000	0.000	0.000	0.000	0.490	0.000	0.000	0.358	0.000	0.000	0.000	0.000
Prev(%)	98.025	97.317	37.284	54.591	0.000	0.000	0.000	0.000	0.000	0.000	21.338	0.000	0.000	30.667	0.000	0.000	0.000	0.000

Dewhirst (35x9) (not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA
Avg (%)	0.651	0.808	0.047	0.087	0.083	0.013	0.005	0.001	0.004	0.000
10^thp	0.011	0.027	0.000	0.001	0.000	0.000	0.000	0.000	0.000	0.000
90^thp	2.015	1.321	0.107	0.108	0.218	0.039	0.014	0.006	0.009	0.000
Stdev	1.191	1.557	0.104	0.251	0.167	0.025	0.012	0.003	0.014	0.000
Prev(%)	94.595	100.000	65.116	91.429	85.714	64.000	42.424	25.806	30.000	0.000

Human Microbiome Project Metaphlan (not published) (data from healthy subjects)

No Notes

	SUBP	SUPP	PERIO	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	RAF	VIN	MVA	PFO	STO
Avg (%)	0.918	1.289	0.847	0.279	0.068	0.000	0.000	0.000	0.000	0.002	0.008	0.019	0.005	0.170	0.000	0.014	0.002	0.000
10^thp	0.003	0.050	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.170	0.000	0.000	0.000	0.000
90^thp	2.096	3.125	2.223	0.134	0.145	0.000	0.000	0.000	0.000	0.000	0.000	0.007	0.000	0.170	0.000	0.000	0.000	0.000
Stdev	1.090	2.222	1.558	1.067	0.228	0.000	0.000	0.000	0.000	0.012	0.089	0.086	0.021	0.000	0.000	0.053	0.028	0.001
Prev(%)	87.500	94.949	62.500	23.529	34.309	0.000	0.000	0.000	0.000	8.216	2.252	12.500	9.375	100.000	0.000	7.143	0.505	0.182

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