Species: Actinomyces sp._HMT_169
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BM - Buccal Mucosa
KG - Keratinized Gingiva
HP - Hard Palate
TD - Tongue Dorsum
PT - Palatine Tonsils
TH - Throat
SV - Saliva
SupP - Supra-gingival Plaque
SubP - Sub-gingival Plaque
NS - Nasal
ST - Stool
Prev - Prevalence
10thp - 10th percentile
90thp - 90th percentile
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Notes:
reads equally close to A. sp. HMT 169 and A. sp. HMT 175 were assigned half to each taxon
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percent abundance
| SubP | SupP | KG | BM | HP | SV | TH | PT | TD | ST |
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Avg | 1.554 | 1.923 | 0.143 | 0.502 | 0.067 | 0.103 | 0.022 | 0.022 | 0.006 | 0.000 |
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10thp | 0.003 | 0.015 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
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90thp | 3.231 | 4.547 | 0.363 | 1.408 | 0.150 | 0.299 | 0.073 | 0.055 | 0.020 | 0.000 |
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Stdev | 3.204 | 3.593 | 0.389 | 1.062 | 0.143 | 0.157 | 0.047 | 0.049 | 0.018 | 0.000 |
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Prev | 89.610 | 92.208 | 58.442 | 80.519 | 71.429 | 64.935 | 40.260 | 41.558 | 25.974 | 1.299 |
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Notes:
Reads equally close to A. naeslundii, A. oris, and A. sp. HMT 169, 170, 171, and 175 were divided equally among taxa.
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percent abundance
| SubP | SupP | KG | BM | HP | SV | TH | PT | TD | ST |
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Avg | 0.446 | 0.536 | 0.030 | 0.119 | 0.026 | 0.027 | 0.015 | 0.014 | 0.003 | 0.000 |
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10thp | 0.020 | 0.043 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
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90thp | 1.087 | 1.184 | 0.065 | 0.235 | 0.056 | 0.062 | 0.023 | 0.019 | 0.009 | 0.000 |
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Stdev | 0.901 | 0.911 | 0.083 | 0.282 | 0.070 | 0.036 | 0.074 | 0.099 | 0.006 | 0.000 |
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Prev | 95.946 | 97.297 | 47.973 | 83.108 | 73.649 | 77.703 | 50.676 | 41.216 | 31.757 | 1.399 |
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From: Dewhirst 35x9 data (not published yet)
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Notes:
Reads equally close to HMT 169 and 893 were assigned half to each taxon.
Reads equally close to HMT 169 and 175 were assigned half to each taxon.
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percent abundance
| SubP | SupP | KG | BM | HP | SV | TH | PT | TD | NS |
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Avg | 1.872 | 3.016 | 0.280 | 0.404 | 0.195 | 0.062 | 0.024 | 0.032 | 0.005 | 0.001 |
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10thp | 0.003 | 0.016 | 0.000 | 0.011 | 0.000 | 0.003 | 0.000 | 0.000 | 0.000 | 0.000 |
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90thp | 5.581 | 7.900 | 0.302 | 1.132 | 0.532 | 0.140 | 0.030 | 0.009 | 0.012 | 0.000 |
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Stdev | 4.767 | 6.737 | 1.245 | 0.742 | 0.290 | 0.124 | 0.063 | 0.159 | 0.008 | 0.005 |
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Prev | 100.000 | 97.059 | 88.889 | 97.059 | 78.571 | 91.667 | 72.727 | 64.516 | 58.824 | 5.000 |
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