Species: Arachnia rubra (HMT-194)
Download Options
Hide Legend
Prev - Prevalence
10thp - 10th percentile
90thp - 90th percentile
ND - less than 0.001%
Body Site Legend:
| SUBP-- Subgingival Plaque |
| SUPP -- Supragingival Plaque |
| PERIO -- Periodontal |
| AKE -- Attached Keratinized Gingiva |
| BMU -- Buccal Mucosa |
| HPA -- Hard Palate |
| SAL -- Saliva |
| THR -- Throat |
| PTO -- Palatine Tonsils |
| TDO -- Tongue Dorsum |
| ANA -- Anterior Nares |
| LRC -- L_Retroauricular Crease |
| RRC -- R_Retroauricular Crease |
| LAF -- L_Antecubital Fossa |
| RAF -- R_Antecubital Fossa |
| VIN -- Vaginal Introitus |
| MVA -- Mid Vagina |
| PFO -- Posterior Fornix |
| STO -- Stool |
Prev - Prevalence
10thp - 10th percentile
90thp - 90th percentile
ND - less than 0.001%
HMP 16S RefSeq (V1-V3) (not published)
No Notes
| SUBP | SUPP | AKE | BMU | HPA | SAL | THR | PTO | TDO | ANA | LRC | RRC | LAF | RAF | VIN | MVA | PFO | STO | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Avg (%) | 0.516 | 0.447 | 0.027 | 0.014 | 0.000 | 0.000 | 0.013 | 0.000 | 0.000 | 0.000 | 0.009 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| 10thp | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| 90thp | 1.101 | 1.320 | 0.000 | 0.022 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| Stdev | 1.689 | 1.280 | 0.204 | 0.088 | 0.000 | 0.000 | 0.204 | 0.000 | 0.000 | 0.000 | 0.131 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| Prev(%) | 35.762 | 41.060 | 9.091 | 17.808 | 0.000 | 0.000 | 3.869 | 0.000 | 0.000 | 0.000 | 2.586 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
HMP 16S RefSeq (V3-V5) (not published)
No Notes
| SUBP | SUPP | AKE | BMU | HPA | SAL | THR | PTO | TDO | ANA | LRC | RRC | LAF | RAF | VIN | MVA | PFO | STO | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Avg (%) | 0.341 | 0.471 | 0.029 | 0.024 | 0.011 | 0.000 | 0.019 | 0.000 | 0.000 | 0.000 | 0.031 | 0.000 | 0.102 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| 10thp | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| 90thp | 0.958 | 1.330 | 0.056 | 0.060 | 0.033 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.012 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| Stdev | 1.001 | 1.298 | 0.135 | 0.086 | 0.041 | 0.000 | 0.141 | 0.000 | 0.000 | 0.000 | 0.424 | 0.000 | 0.978 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| Prev(%) | 40.247 | 40.976 | 14.568 | 24.318 | 15.090 | 0.000 | 7.788 | 0.000 | 0.000 | 0.000 | 5.414 | 0.000 | 11.034 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
Dewhirst (35x9) (not published)
No Notes
| SUBP | SUPP | AKE | BMU | HPA | SAL | THR | PTO | TDO | ANA | |
|---|---|---|---|---|---|---|---|---|---|---|
| Avg (%) | 0.268 | 0.206 | 0.003 | 0.007 | 0.003 | 0.002 | 0.000 | 0.000 | 0.002 | 0.000 |
| 10thp | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| 90thp | 0.654 | 0.208 | 0.005 | 0.017 | 0.001 | 0.004 | 0.000 | 0.000 | 0.004 | 0.000 |
| Stdev | 0.873 | 0.695 | 0.010 | 0.019 | 0.012 | 0.003 | 0.001 | 0.001 | 0.007 | 0.000 |
| Prev(%) | 31.081 | 50.000 | 18.605 | 28.571 | 10.714 | 32.000 | 6.061 | 9.677 | 17.500 | 0.000 |
HMP Metaphlan (not published)
No Notes
| SUBP | SUPP | PERIO | AKE | BMU | HPA | SAL | THR | PTO | TDO | ANA | LRC | RRC | RAF | VIN | MVA | PFO | STO | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Avg (%) | 2.313 | 0.996 | 0.008 | 0.214 | 0.020 | 0.000 | 0.009 | 0.000 | 0.000 | 0.002 | 0.006 | 0.001 | 0.000 | 0.000 | 0.000 | 0.004 | 0.000 | 0.000 |
| 10thp | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| 90thp | 6.851 | 2.560 | 0.000 | 0.320 | 0.000 | 0.000 | 0.021 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| Stdev | 4.905 | 2.813 | 0.027 | 0.704 | 0.126 | 0.000 | 0.025 | 0.000 | 0.000 | 0.024 | 0.059 | 0.004 | 0.000 | 0.000 | 0.000 | 0.016 | 0.000 | 0.000 |
| Prev(%) | 58.333 | 44.697 | 8.333 | 11.765 | 9.043 | 0.000 | 12.500 | 0.000 | 0.000 | 1.643 | 2.252 | 4.167 | 0.000 | 0.000 | 0.000 | 7.143 | 0.000 | 0.000 |
Eren V1-V3 www.pnas.org
No Notes
| SUBP | SUPP | AKE | BMU | HPA | SAL | THR | PTO | TDO | STO | |
|---|---|---|---|---|---|---|---|---|---|---|
| Avg (%) | 0.270 | 0.451 | 0.004 | 0.028 | 0.004 | 0.013 | 0.003 | 0.002 | 0.001 | 0.000 |
| 10thp | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| 90thp | 1.048 | 1.148 | 0.000 | 0.018 | 0.005 | 0.030 | 0.000 | 0.000 | 0.000 | 0.000 |
| Stdev | 0.635 | 1.327 | 0.020 | 0.144 | 0.013 | 0.055 | 0.014 | 0.009 | 0.005 | 0.000 |
| Prev(%) | 36.364 | 40.260 | 6.494 | 15.584 | 10.390 | 14.286 | 3.896 | 3.896 | 3.896 | 0.000 |
Eren V3-V5 www.pnas.org
Notes:
Reads equally close to A. propionica and A. rubra were assigned half to each taxon.
Reads equally close to A. propionica and A. rubra were assigned half to each taxon.
| SUBP | SUPP | AKE | BMU | HPA | SAL | THR | PTO | TDO | STO | |
|---|---|---|---|---|---|---|---|---|---|---|
| Avg (%) | 0.284 | 0.312 | 0.005 | 0.009 | 0.008 | 0.010 | 0.004 | 0.004 | 0.000 | 0.000 |
| 10thp | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| 90thp | 0.792 | 0.737 | 0.000 | 0.032 | 0.014 | 0.030 | 0.010 | 0.008 | 0.000 | 0.000 |
| Stdev | 0.434 | 0.587 | 0.045 | 0.025 | 0.053 | 0.021 | 0.025 | 0.016 | 0.003 | 0.002 |
| Prev(%) | 83.784 | 85.811 | 4.054 | 26.351 | 20.946 | 29.730 | 12.162 | 12.162 | 3.378 | 2.098 |
