Species: Staphylococcus capitis (HMT-116)
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Prev - Prevalence
10thp - 10th percentile
90thp - 90th percentile
ND - less than 0.001%
Body Site Legend:
| SUBP-- Subgingival Plaque |
| SUPP -- Supragingival Plaque |
| PERIO -- Periodontal |
| AKE -- Attached Keratinized Gingiva |
| BMU -- Buccal Mucosa |
| HPA -- Hard Palate |
| SAL -- Saliva |
| THR -- Throat |
| PTO -- Palatine Tonsils |
| TDO -- Tongue Dorsum |
| ANA -- Anterior Nares |
| LRC -- L_Retroauricular Crease |
| RRC -- R_Retroauricular Crease |
| LAF -- L_Antecubital Fossa |
| RAF -- R_Antecubital Fossa |
| VIN -- Vaginal Introitus |
| MVA -- Mid Vagina |
| PFO -- Posterior Fornix |
| STO -- Stool |
Prev - Prevalence
10thp - 10th percentile
90thp - 90th percentile
ND - less than 0.001%
Eren V1-V3 www.pnas.org
(data from healthy subjects)
No Notes
Eren V3-V5 www.pnas.org
(data from healthy subjects)
No Notes
Human Microbiome Project 16S RefSeq (V1-V3) (not published)
(data from healthy subjects)
Notes:
Because HMT-567 is not present individually, all equidistant reads were assigned to HMT-116 at these sites (ANA,LRC,RAF,RRC,SAL).
Reads equidistant to HMT-116 and HMT-567 were assigned to each taxon in proportion to the abundance of HMT-116 and HMT-567 individually at this body site (LAF).
Neither HMT-116 nor HMT-567 were present singularly so these reads were split evenly at this site (THR).
Because HMT-567 is not present individually, all equidistant reads were assigned to HMT-116 at these sites (ANA,LRC,RAF,RRC,SAL).
Reads equidistant to HMT-116 and HMT-567 were assigned to each taxon in proportion to the abundance of HMT-116 and HMT-567 individually at this body site (LAF).
Neither HMT-116 nor HMT-567 were present singularly so these reads were split evenly at this site (THR).
| SUBP | SUPP | AKE | BMU | HPA | SAL | THR | PTO | TDO | ANA | LRC | RRC | LAF | RAF | VIN | MVA | PFO | STO | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Avg (%) | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.237 | 0.005 | 0.000 | 0.000 | 0.689 | 1.601 | 2.320 | 3.874 | 3.485 | 0.000 | 0.000 | 0.000 | 0.000 |
| 10thp | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| 90thp | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.024 | 0.000 | 0.000 | 0.000 | 1.514 | 3.217 | 3.626 | 9.036 | 6.754 | 0.000 | 0.000 | 0.000 | 0.000 |
| Stdev | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 2.486 | 0.038 | 0.000 | 0.000 | 1.766 | 5.372 | 7.494 | 8.949 | 9.423 | 0.000 | 0.000 | 0.000 | 0.000 |
| Prev(%) | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 16.154 | 6.250 | 0.000 | 0.000 | 84.000 | 84.483 | 86.969 | 74.138 | 79.263 | 0.000 | 0.000 | 0.000 | 0.000 |
Human Microbiome Project 16S RefSeq (V3-V5) (not published)
(data from healthy subjects)
Notes:
No data – the v3v5 region of the 16S rRNA gene does not distinguish this species from its close relatives.
No data – the v3v5 region of the 16S rRNA gene does not distinguish this species from its close relatives.
Dewhirst (35x9) (not published)
No Notes
| SUBP | SUPP | AKE | BMU | HPA | SAL | THR | PTO | TDO | ANA | |
|---|---|---|---|---|---|---|---|---|---|---|
| Avg (%) | 0.001 | 0.000 | 0.000 | 0.001 | 0.000 | 0.000 | 0.000 | 0.013 | 0.000 | 0.281 |
| 10thp | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.004 |
| 90thp | 0.001 | 0.000 | 0.000 | 0.002 | 0.001 | 0.000 | 0.001 | 0.000 | 0.000 | 1.125 |
| Stdev | 0.004 | 0.002 | 0.000 | 0.001 | 0.001 | 0.001 | 0.001 | 0.072 | 0.000 | 0.489 |
| Prev(%) | 12.162 | 5.882 | 6.977 | 28.571 | 14.286 | 10.000 | 12.121 | 6.452 | 5.000 | 95.000 |
Human Microbiome Project Metaphlan (not published)
(data from healthy subjects)
No Notes
| SUBP | SUPP | PERIO | AKE | BMU | HPA | SAL | THR | PTO | TDO | ANA | LRC | RRC | RAF | VIN | MVA | PFO | STO | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Avg (%) | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.127 | 1.311 | 0.451 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| 10thp | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.058 | 0.001 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| 90thp | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.119 | 3.102 | 1.351 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| Stdev | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.735 | 2.527 | 0.630 | 0.000 | 0.000 | 0.000 | 0.003 | 0.000 |
| Prev(%) | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 15.315 | 91.667 | 87.500 | 0.000 | 0.000 | 0.000 | 0.505 | 0.000 |
