Species: Streptococcus mitis (HMT-677)
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Prev - Prevalence
10thp - 10th percentile
90thp - 90th percentile
ND - less than 0.001%
Body Site Legend:
| SUBP-- Subgingival Plaque |
| SUPP -- Supragingival Plaque |
| PERIO -- Periodontal |
| AKE -- Attached Keratinized Gingiva |
| BMU -- Buccal Mucosa |
| HPA -- Hard Palate |
| SAL -- Saliva |
| THR -- Throat |
| PTO -- Palatine Tonsils |
| TDO -- Tongue Dorsum |
| ANA -- Anterior Nares |
| LRC -- L_Retroauricular Crease |
| RRC -- R_Retroauricular Crease |
| LAF -- L_Antecubital Fossa |
| RAF -- R_Antecubital Fossa |
| VIN -- Vaginal Introitus |
| MVA -- Mid Vagina |
| PFO -- Posterior Fornix |
| STO -- Stool |
Prev - Prevalence
10thp - 10th percentile
90thp - 90th percentile
ND - less than 0.001%
HMP 16S RefSeq (V1-V3) (not published)
** View Notes (mouse over) **
Notes:
Some of the reads equidistant from these taxa (058-070-071-073-398-423-431-638-677-707-734-851) are included in HMT-677 because they are too close to differentiate at these sites (AKE,BMU,HPA,PTO,SAL,SUBP,SUPP,THR).
Because HMT-058 is not present individually, all equidistant reads were assigned to HMT-677 at this these sites (BMU,HPA).
Reads equidistant to HMT-398 and HMT-677 were assigned to each taxon in proportion to the abundance of HMT-398 and HMT-677 individually at these sites (AKE,ANA,LAF,LRC,PTO,RAF,RRC,SAL,SUBP,SUPP,THR,TDO).
Some of the reads equidistant from these taxa (058-070-071-073-398-423-431-638-677-707-734-851) are included in HMT-677 because they are too close to differentiate at these sites (AKE,BMU,HPA,PTO,SAL,SUBP,SUPP,THR).
Because HMT-058 is not present individually, all equidistant reads were assigned to HMT-677 at this these sites (BMU,HPA).
Reads equidistant to HMT-398 and HMT-677 were assigned to each taxon in proportion to the abundance of HMT-398 and HMT-677 individually at these sites (AKE,ANA,LAF,LRC,PTO,RAF,RRC,SAL,SUBP,SUPP,THR,TDO).
| SUBP | SUPP | AKE | BMU | HPA | SAL | THR | PTO | TDO | ANA | LRC | RRC | LAF | RAF | VIN | MVA | PFO | STO | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Avg (%) | 2.298 | 1.528 | 42.515 | 37.195 | 29.049 | 4.409 | 8.580 | 6.978 | 0.632 | 1.234 | 0.379 | 0.330 | 2.000 | 1.901 | 0.000 | 0.000 | 0.000 | 0.000 |
| 10thp | 0.104 | 0.230 | 17.134 | 14.301 | 6.266 | 0.524 | 0.364 | 0.281 | 0.061 | 0.006 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| 90thp | 4.710 | 3.287 | 70.986 | 64.310 | 55.727 | 8.722 | 25.685 | 23.533 | 1.746 | 2.973 | 1.036 | 0.879 | 5.492 | 5.376 | 0.000 | 0.000 | 0.000 | 0.000 |
| Stdev | 6.771 | 2.627 | 19.593 | 19.253 | 18.781 | 4.544 | 13.006 | 12.476 | 0.876 | 3.826 | 0.907 | 0.781 | 2.801 | 2.810 | 0.000 | 0.000 | 0.000 | 0.000 |
| Prev(%) | 99.338 | 100.000 | 100.000 | 100.000 | 100.000 | 97.692 | 100.000 | 100.000 | 99.355 | 90.000 | 76.149 | 74.788 | 83.333 | 85.253 | 0.000 | 0.000 | 0.000 | 0.000 |
HMP 16S RefSeq (V3-V5) (not published)
** View Notes (mouse over) **
Notes:
No data – the v3v5 region of the 16S rRNA gene does not distinguish this species from its close relatives.
No data – the v3v5 region of the 16S rRNA gene does not distinguish this species from its close relatives.
Dewhirst (35x9) (not published)
** View Notes (mouse over) **
Notes:
Reads equally close to numerous Streptococcus taxa in the mitis/oralis/infantis cluster were divided equally among taxa except not assigned to S. pneumoniae.
Reads equally close to numerous Streptococcus taxa in the mitis/oralis/infantis cluster were divided equally among taxa except not assigned to S. pneumoniae.
| SUBP | SUPP | AKE | BMU | HPA | SAL | THR | PTO | TDO | ANA | |
|---|---|---|---|---|---|---|---|---|---|---|
| Avg (%) | 2.192 | 1.839 | 19.827 | 12.654 | 11.325 | 3.260 | 3.510 | 4.300 | 6.618 | 0.064 |
| 10thp | 0.049 | 0.323 | 0.573 | 2.538 | 0.940 | 0.338 | 0.206 | 0.161 | 0.107 | 0.000 |
| 90thp | 5.910 | 3.959 | 41.563 | 27.648 | 29.893 | 7.115 | 9.949 | 6.092 | 31.965 | 0.266 |
| Stdev | 3.396 | 2.202 | 18.130 | 10.139 | 15.288 | 6.386 | 4.903 | 8.022 | 14.569 | 0.127 |
| Prev(%) | 100.000 | 100.000 | 100.000 | 100.000 | 100.000 | 100.000 | 100.000 | 100.000 | 100.000 | 60.000 |
HMP Metaphlan (not published)
No Notes
| SUBP | SUPP | PERIO | AKE | BMU | HPA | SAL | THR | PTO | TDO | ANA | LRC | RRC | RAF | VIN | MVA | PFO | STO | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Avg (%) | 0.492 | 0.516 | 0.022 | 30.451 | 24.984 | 36.610 | 4.812 | 2.554 | 3.535 | 0.678 | 0.391 | 0.056 | 0.321 | 0.960 | 0.000 | 0.282 | 0.046 | 0.004 |
| 10thp | 0.036 | 0.020 | 0.000 | 7.386 | 5.790 | 36.610 | 1.304 | 0.065 | 0.134 | 0.030 | 0.000 | 0.000 | 0.000 | 0.960 | 0.000 | 0.000 | 0.000 | 0.000 |
| 90thp | 1.582 | 1.270 | 0.064 | 66.052 | 50.285 | 36.610 | 9.671 | 5.060 | 2.782 | 1.810 | 0.587 | 0.121 | 0.099 | 0.960 | 0.000 | 0.975 | 0.000 | 0.010 |
| Stdev | 0.651 | 1.069 | 0.052 | 25.183 | 17.326 | 0.000 | 3.868 | 3.861 | 13.168 | 1.069 | 1.555 | 0.082 | 1.503 | 0.000 | 0.000 | 0.426 | 0.360 | 0.028 |
| Prev(%) | 95.833 | 94.192 | 29.167 | 100.000 | 99.734 | 100.000 | 100.000 | 93.750 | 96.000 | 96.479 | 30.631 | 62.500 | 46.875 | 100.000 | 0.000 | 35.714 | 8.081 | 10.182 |
Eren V1-V3 www.pnas.org
** View Notes (mouse over) **
Notes:
reads equally close to S. infantis, S. mitis, S. oralis, S. australis, S. cristatus, S. parasanguinis clade 721, S. pneumoniae, and S. sp. HMT 061, 064, 066, 074, 423 were divided equally among taxa except not assigned to S. pneumoniae
reads equally close to S. infantis, S. mitis, S. oralis, S. australis, S. cristatus, S. parasanguinis clade 721, S. pneumoniae, and S. sp. HMT 061, 064, 066, 074, 423 were divided equally among taxa except not assigned to S. pneumoniae
| SUBP | SUPP | AKE | BMU | HPA | SAL | THR | PTO | TDO | STO | |
|---|---|---|---|---|---|---|---|---|---|---|
| Avg (%) | 0.688 | 0.756 | 4.764 | 4.649 | 3.280 | 0.789 | 1.410 | 1.603 | 0.601 | 0.003 |
| 10thp | 0.121 | 0.200 | 2.595 | 2.124 | 1.203 | 0.174 | 0.164 | 0.208 | 0.131 | 0.000 |
| 90thp | 1.481 | 1.612 | 6.873 | 7.260 | 5.880 | 1.447 | 3.628 | 4.429 | 1.309 | 0.009 |
| Stdev | 0.934 | 0.566 | 1.800 | 1.915 | 1.770 | 0.579 | 1.512 | 1.784 | 0.487 | 0.004 |
| Prev(%) | 100.000 | 100.000 | 100.000 | 100.000 | 100.000 | 97.403 | 100.000 | 100.000 | 100.000 | 49.351 |
Eren V3-V5 www.pnas.org
** View Notes (mouse over) **
Notes:
Reads equally close to S. mitis, S. infantis, S. lactarius, S. oralis, S. peroris, and S. sp. HMT 061, 064, 074, and 423 were divided equally among taxa.
Reads equally close to S. mitis, S. infantis, S. lactarius, S. oralis, S. peroris, and S. sp. HMT 061, 064, 074, and 423 were divided equally among taxa.
| SUBP | SUPP | AKE | BMU | HPA | SAL | THR | PTO | TDO | STO | |
|---|---|---|---|---|---|---|---|---|---|---|
| Avg (%) | 0.467 | 0.670 | 2.381 | 2.608 | 1.036 | 0.299 | 0.638 | 0.617 | 0.104 | 0.000 |
| 10thp | 0.076 | 0.170 | 0.634 | 0.767 | 0.249 | 0.084 | 0.046 | 0.044 | 0.012 | 0.000 |
| 90thp | 0.960 | 1.337 | 4.596 | 4.710 | 2.263 | 0.565 | 1.589 | 1.597 | 0.214 | 0.001 |
| Stdev | 0.412 | 0.500 | 1.657 | 1.496 | 0.882 | 0.249 | 0.938 | 0.841 | 0.131 | 0.002 |
| Prev(%) | 100.000 | 100.000 | 100.000 | 100.000 | 100.000 | 100.000 | 100.000 | 100.000 | 97.973 | 11.888 |
