HOMD ::species::Streptococcus parasanguinis

Species: Streptococcus parasanguinis (HMT-411)

Each rank name is a link to abundance plots at that rank:
Full Lineage: Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus; Streptococcus parasanguinis

LINKS: Ecology Home | HMT-411: Body Sites Data | HMT-411: Taxon Description | Life Page: Streptococcus parasanguinis

Oral:	SUBP-- Subgingival Plaque	SUPP -- Supragingival Plaque	PERIO -- Periodontal	AKE -- Attached Keratinized Gingiva	BMU -- Buccal Mucosa
Oral:	HPA -- Hard Palate	SAL -- Saliva	THR -- Throat	PTO -- Palatine Tonsils	TDO -- Tongue Dorsum
Nasal:	ANA -- Anterior Nares
Skin:	LRC -- L_Retroauricular Crease	RRC -- R_Retroauricular Crease	LAF -- L_Antecubital Fossa	RAF -- R_Antecubital Fossa
Vaginal:	VIN -- Vaginal Introitus	MVA -- Mid Vagina	PFO -- Posterior Fornix
Gut:	STO -- Stool

Oral:

SUBP-- Subgingival Plaque

SUPP -- Supragingival Plaque

PERIO -- Periodontal

AKE -- Attached Keratinized Gingiva

BMU -- Buccal Mucosa

HPA -- Hard Palate

SAL -- Saliva

THR -- Throat

PTO -- Palatine Tonsils

TDO -- Tongue Dorsum

Nasal:

ANA -- Anterior Nares

Skin:

LRC -- L_Retroauricular Crease

RRC -- R_Retroauricular Crease

LAF -- L_Antecubital Fossa

RAF -- R_Antecubital Fossa

Vaginal:

VIN -- Vaginal Introitus

MVA -- Mid Vagina

PFO -- Posterior Fornix

Gut:

STO -- Stool

Prev - Prevalence
10^thp - 10^th percentile
90^thp - 90^th percentile
ND - less than 0.001%

HMP 16S RefSeq (V1-V3) (not published)

** View Notes (mouse over) **

Notes:
Reads equidistant to HMT-411 and HMT-721 were assigned to each taxon in proportion to the abundance of HMT-411 and HMT-721 individually at these sites (BMU,HPA,PTO,SAL,THR,TDO).

Neither HMT-411 nor HMT-721 were present singularly so these reads were split evenly at this site (STO).

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	0.000	0.000	0.000	0.015	0.053	0.040	0.143	0.098	0.125	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.011
10^thp	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
90^thp	0.000	0.000	0.000	0.029	0.115	0.083	0.278	0.154	0.325	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.014
Stdev	0.000	0.000	0.000	0.065	0.184	0.115	0.400	0.302	0.327	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.066
Prev(%)	0.000	0.000	0.000	52.055	47.651	70.000	83.929	74.000	81.935	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	39.869

HMP 16S RefSeq (V3-V5) (not published)

No Notes

Dewhirst (35x9) (not published)

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Notes:
combined from subspecies

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA
Avg (%)	0.013	0.039	0.280	0.321	0.750	1.280	1.352	1.786	1.383	0.002
10^thp	0.000	0.000	0.001	0.009	0.035	0.066	0.085	0.118	0.032	0.000
90^thp	0.029	0.095	1.085	0.800	1.882	3.481	2.484	2.720	3.511	0.000
Stdev	0.028	0.086	0.552	0.538	0.795	1.272	1.440	3.119	1.943	0.008
Prev(%)	63.514	82.353	90.698	94.286	100.000	100.000	100.000	100.000	100.000	5.000

HMP Metaphlan (not published)

No Notes

	SUBP	SUPP	PERIO	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	RAF	VIN	MVA	PFO	STO
Avg (%)	0.035	0.041	0.234	0.090	0.601	1.090	1.002	1.379	1.665	4.153	0.028	0.000	0.002	0.040	0.037	0.009	0.018	0.038
10^thp	0.000	0.000	0.000	0.000	0.000	1.090	0.077	0.335	0.166	0.250	0.000	0.000	0.000	0.040	0.000	0.000	0.000	0.000
90^thp	0.124	0.060	0.178	0.210	1.645	1.090	2.451	2.975	3.722	9.175	0.000	0.000	0.000	0.040	0.000	0.000	0.000	0.020
Stdev	0.083	0.194	0.915	0.198	0.993	0.000	1.018	1.167	1.783	4.618	0.214	0.000	0.007	0.000	0.124	0.035	0.151	0.564
Prev(%)	29.167	25.758	54.167	58.824	80.053	100.000	87.500	93.750	96.000	96.009	4.955	0.000	6.250	100.000	9.091	7.143	4.040	14.545

Eren V1-V3 www.pnas.org

** View Notes (mouse over) **

Notes:
combined from subspecies

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	0.004	0.006	0.053	0.118	0.477	0.414	0.602	0.503	0.636	0.004
10^thp	0.000	0.000	0.003	0.014	0.080	0.024	0.086	0.108	0.132	0.000
90^thp	0.013	0.017	0.154	0.347	0.977	0.786	1.193	0.815	1.311	0.000
Stdev	0.009	0.013	0.083	0.146	0.374	0.759	0.689	0.754	0.776	0.015
Prev(%)	36.364	51.948	96.104	96.104	100.000	96.104	98.701	100.000	98.701	9.091

Eren V3-V5 www.pnas.org

** View Notes (mouse over) **

Notes:
combined from subspecies

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	0.049	0.073	0.032	0.163	0.495	0.311	0.476	0.419	0.849	0.001
10^thp	0.000	0.000	0.000	0.015	0.094	0.057	0.107	0.077	0.184	0.000
90^thp	0.119	0.159	0.099	0.416	1.050	0.667	1.016	0.936	1.746	0.003
Stdev	0.089	0.112	0.071	0.203	0.445	0.326	0.395	0.384	0.737	0.004
Prev(%)	79.054	86.486	56.081	99.324	100.000	100.000	99.324	97.973	100.000	16.084

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