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Taxonomy: V4.0   |  16S rRNA RefSeq: V16.02   |  Genomic RefSeq: V11.01
Species: Streptococcus parasanguinis (HMT-411)
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Each rank name is a link to abundance plots at that rank:
Full Lineage: Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus; Streptococcus parasanguinis
Oral:
SUBP-- Subgingival Plaque SUPP -- Supragingival Plaque PERIO -- Periodontal AKE -- Attached Keratinized Gingiva BMU -- Buccal Mucosa
HPA -- Hard Palate SAL -- Saliva THR -- Throat PTO -- Palatine Tonsils TDO -- Tongue Dorsum
Nasal:
ANA -- Anterior Nares
Skin:
LRC -- L_Retroauricular Crease RRC -- R_Retroauricular Crease LAF -- L_Antecubital Fossa RAF -- R_Antecubital Fossa
Vaginal:
VIN -- Vaginal Introitus MVA -- Mid Vagina PFO -- Posterior Fornix
Gut:
STO -- Stool
Oral:
SUBP-- Subgingival Plaque
SUPP -- Supragingival Plaque
PERIO -- Periodontal
AKE -- Attached Keratinized Gingiva
BMU -- Buccal Mucosa
HPA -- Hard Palate
SAL -- Saliva
THR -- Throat
PTO -- Palatine Tonsils
TDO -- Tongue Dorsum
Nasal:
ANA -- Anterior Nares
Skin:
LRC -- L_Retroauricular Crease
RRC -- R_Retroauricular Crease
LAF -- L_Antecubital Fossa
RAF -- R_Antecubital Fossa
Vaginal:
VIN -- Vaginal Introitus
MVA -- Mid Vagina
PFO -- Posterior Fornix
Gut:
STO -- Stool

Prev - Prevalence
10thp - 10th percentile
90thp - 90th percentile
ND - less than 0.001%
HMP 16S RefSeq (V1-V3) (not published)
** View Notes (mouse over) **
Notes:
Reads equidistant to HMT-411 and HMT-721 were assigned to each taxon in proportion to the abundance of HMT-411 and HMT-721 individually at these sites (BMU,HPA,PTO,SAL,THR,TDO).

Neither HMT-411 nor HMT-721 were present singularly so these reads were split evenly at this site (STO).



SUBPSUPPAKEBMUHPASALTHRPTOTDOANALRCRRCLAFRAFVINMVAPFOSTO
Avg (%)0.0000.0000.0000.0150.0530.0400.1430.0980.1250.0000.0000.0000.0000.0000.0000.0000.0000.011
10thp0.0000.0000.0000.0000.0000.0000.0000.0000.0000.0000.0000.0000.0000.0000.0000.0000.0000.000
90thp0.0000.0000.0000.0290.1150.0830.2780.1540.3250.0000.0000.0000.0000.0000.0000.0000.0000.014
Stdev0.0000.0000.0000.0650.1840.1150.4000.3020.3270.0000.0000.0000.0000.0000.0000.0000.0000.066
Prev(%)0.0000.0000.00052.05547.65170.00083.92974.00081.9350.0000.0000.0000.0000.0000.0000.0000.00039.869

HMP 16S RefSeq (V3-V5) (not published)
No Notes

Dewhirst (35x9) (not published)
** View Notes (mouse over) **
Notes:
combined from subspecies

SUBPSUPPAKEBMUHPASALTHRPTOTDOANA
Avg (%)0.0130.0390.2800.3210.7501.2801.3521.7861.3830.002
10thp0.0000.0000.0010.0090.0350.0660.0850.1180.0320.000
90thp0.0290.0951.0850.8001.8823.4812.4842.7203.5110.000
Stdev0.0280.0860.5520.5380.7951.2721.4403.1191.9430.008
Prev(%)63.51482.35390.69894.286100.000100.000100.000100.000100.0005.000

HMP Metaphlan (not published)
No Notes
SUBPSUPPPERIOAKEBMUHPASALTHRPTOTDOANALRCRRCRAFVINMVAPFOSTO
Avg (%)0.0350.0410.2340.0900.6011.0901.0021.3791.6654.1530.0280.0000.0020.0400.0370.0090.0180.038
10thp0.0000.0000.0000.0000.0001.0900.0770.3350.1660.2500.0000.0000.0000.0400.0000.0000.0000.000
90thp0.1240.0600.1780.2101.6451.0902.4512.9753.7229.1750.0000.0000.0000.0400.0000.0000.0000.020
Stdev0.0830.1940.9150.1980.9930.0001.0181.1671.7834.6180.2140.0000.0070.0000.1240.0350.1510.564
Prev(%)29.16725.75854.16758.82480.053100.00087.50093.75096.00096.0094.9550.0006.250100.0009.0917.1434.04014.545

Eren V1-V3 www.pnas.org
** View Notes (mouse over) **
Notes:
combined from subspecies

SUBPSUPPAKEBMUHPASALTHRPTOTDOSTO
Avg (%)0.0040.0060.0530.1180.4770.4140.6020.5030.6360.004
10thp0.0000.0000.0030.0140.0800.0240.0860.1080.1320.000
90thp0.0130.0170.1540.3470.9770.7861.1930.8151.3110.000
Stdev0.0090.0130.0830.1460.3740.7590.6890.7540.7760.015
Prev(%)36.36451.94896.10496.104100.00096.10498.701100.00098.7019.091

Eren V3-V5 www.pnas.org
** View Notes (mouse over) **
Notes:
combined from subspecies

SUBPSUPPAKEBMUHPASALTHRPTOTDOSTO
Avg (%)0.0490.0730.0320.1630.4950.3110.4760.4190.8490.001
10thp0.0000.0000.0000.0150.0940.0570.1070.0770.1840.000
90thp0.1190.1590.0990.4161.0500.6671.0160.9361.7460.003
Stdev0.0890.1120.0710.2030.4450.3260.3950.3840.7370.004
Prev(%)79.05486.48656.08199.324100.000100.00099.32497.973100.00016.084