Species: Streptococcus pneumoniae (HMT-734)
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Prev - Prevalence
10thp - 10th percentile
90thp - 90th percentile
ND - less than 0.001%
Body Site Legend:
| SUBP-- Subgingival Plaque |
| SUPP -- Supragingival Plaque |
| PERIO -- Periodontal |
| AKE -- Attached Keratinized Gingiva |
| BMU -- Buccal Mucosa |
| HPA -- Hard Palate |
| SAL -- Saliva |
| THR -- Throat |
| PTO -- Palatine Tonsils |
| TDO -- Tongue Dorsum |
| ANA -- Anterior Nares |
| LRC -- L_Retroauricular Crease |
| RRC -- R_Retroauricular Crease |
| LAF -- L_Antecubital Fossa |
| RAF -- R_Antecubital Fossa |
| VIN -- Vaginal Introitus |
| MVA -- Mid Vagina |
| PFO -- Posterior Fornix |
| STO -- Stool |
Prev - Prevalence
10thp - 10th percentile
90thp - 90th percentile
ND - less than 0.001%
HMP 16S RefSeq (V1-V3) (not published)
** View Notes (mouse over) **
Notes:
Because HMT-851 is not present individually, all equidistant reads were assigned to HMT-734 at this body site (ANA).
Reads equidistant to HMT-398 and HMT-734 were assigned to each taxon in proportion to the abundance of HMT-398 and HMT-734 individually at these sites (RAF,SAL).
Reads equidistant to HMT-734 and HMT-851 were assigned to each taxon in proportion to the abundance of HMT-734 and HMT-851 individually at this body site (THR).
Some of the reads equidistant from these taxa (058-071-073-398-423-431-638-677-734) are included in HMT-734 because they are too close to differentiate at these sites (SAL,THR).
Because HMT-851 is not present individually, all equidistant reads were assigned to HMT-734 at this body site (ANA).
Reads equidistant to HMT-398 and HMT-734 were assigned to each taxon in proportion to the abundance of HMT-398 and HMT-734 individually at these sites (RAF,SAL).
Reads equidistant to HMT-734 and HMT-851 were assigned to each taxon in proportion to the abundance of HMT-734 and HMT-851 individually at this body site (THR).
Some of the reads equidistant from these taxa (058-071-073-398-423-431-638-677-734) are included in HMT-734 because they are too close to differentiate at these sites (SAL,THR).
| SUBP | SUPP | AKE | BMU | HPA | SAL | THR | PTO | TDO | ANA | LRC | RRC | LAF | RAF | VIN | MVA | PFO | STO | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Avg (%) | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.003 | 0.106 | 0.000 | 0.000 | 0.189 | 0.000 | 0.000 | 0.000 | 0.024 | 0.000 | 0.000 | 0.000 | 0.000 |
| 10thp | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| 90thp | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.001 | 0.031 | 0.000 | 0.000 | 0.057 | 0.000 | 0.000 | 0.000 | 0.011 | 0.000 | 0.000 | 0.000 | 0.000 |
| Stdev | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.028 | 0.867 | 0.000 | 0.000 | 2.073 | 0.000 | 0.000 | 0.000 | 0.300 | 0.000 | 0.000 | 0.000 | 0.000 |
| Prev(%) | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 18.462 | 62.202 | 0.000 | 0.000 | 40.333 | 0.000 | 0.000 | 0.000 | 37.327 | 0.000 | 0.000 | 0.000 | 0.000 |
HMP 16S RefSeq (V3-V5) (not published)
No Notes
Dewhirst (35x9) (not published)
** View Notes (mouse over) **
Notes:
Reads equally close to numerous Streptococcus taxa in the mitis/oralis/infantis cluster were divided equally among taxa except not assigned to S. pneumoniae.
Reads equally close to numerous Streptococcus taxa in the mitis/oralis/infantis cluster were divided equally among taxa except not assigned to S. pneumoniae.
| SUBP | SUPP | AKE | BMU | HPA | SAL | THR | PTO | TDO | ANA | |
|---|---|---|---|---|---|---|---|---|---|---|
| Avg (%) | 0.240 | 0.325 | 0.940 | 1.067 | 0.322 | 0.231 | 0.455 | 0.632 | 0.529 | 0.025 |
| 10thp | 0.002 | 0.016 | 0.019 | 0.180 | 0.047 | 0.017 | 0.012 | 0.007 | 0.000 | 0.000 |
| 90thp | 0.726 | 0.786 | 2.559 | 1.864 | 0.863 | 0.638 | 1.432 | 1.141 | 2.766 | 0.046 |
| Stdev | 0.342 | 0.498 | 1.432 | 1.175 | 0.415 | 0.379 | 0.718 | 1.810 | 1.196 | 0.067 |
| Prev(%) | 93.243 | 97.059 | 100.000 | 100.000 | 96.429 | 98.000 | 100.000 | 96.774 | 87.500 | 45.000 |
HMP Metaphlan (not published)
No Notes
| SUBP | SUPP | PERIO | AKE | BMU | HPA | SAL | THR | PTO | TDO | ANA | LRC | RRC | RAF | VIN | MVA | PFO | STO | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Avg (%) | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.030 | 0.004 | 0.000 | 0.148 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| 10thp | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| 90thp | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.030 | 0.020 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| Stdev | 0.000 | 0.000 | 0.000 | 0.000 | 0.001 | 0.000 | 0.000 | 0.105 | 0.012 | 0.000 | 1.719 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| Prev(%) | 0.000 | 0.000 | 0.000 | 0.000 | 0.532 | 0.000 | 0.000 | 12.500 | 16.000 | 0.000 | 2.252 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
Eren V1-V3 www.pnas.org
No Notes
Eren V3-V5 www.pnas.org
No Notes
