HOMD ::Species:Streptococcus salivarius

Species: Streptococcus salivarius (HMT-755)

Full Lineage: Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus; Streptococcus salivarius Each rank name is a link to abundance plots at that rank:

LINKS: Ecology Home | HMT-755: Body Sites Data | HMT-755: Taxon Description | Life Page: Streptococcus salivarius

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Oral:

SUBP-- Subgingival Plaque

SUPP -- Supragingival Plaque

PERIO -- Periodontal

AKE -- Attached Keratinized Gingiva

BMU -- Buccal Mucosa

HPA -- Hard Palate

SAL -- Saliva

THR -- Throat

PTO -- Palatine Tonsils

TDO -- Tongue Dorsum

Nasal:

ANA -- Anterior Nares

Skin:

LRC -- L_Retroauricular Crease

RRC -- R_Retroauricular Crease

LAF -- L_Antecubital Fossa

RAF -- R_Antecubital Fossa

Vaginal:

VIN -- Vaginal Introitus

MVA -- Mid Vagina

PFO -- Posterior Fornix

Gut:

STO -- Stool

Prev - Prevalence
10^thp - 10^th percentile
90^thp - 90^th percentile
ND - less than 0.001%

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HMP 16S RefSeq (V1-V3) (not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	0.088	0.000	0.671	0.837	3.935	2.623	5.366	5.626	6.789	0.223	0.187	0.155	1.309	1.513	0.119	0.192	0.041	15.665
10^thp	0.000	0.000	0.000	0.017	0.274	0.063	0.376	0.462	0.565	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
90^thp	0.059	0.000	1.402	2.002	10.665	7.299	12.670	12.177	15.209	0.478	0.327	0.271	3.737	4.060	0.098	0.130	0.052	36.173
Stdev	0.509	0.000	1.927	1.789	4.882	3.605	6.035	6.497	6.222	0.621	0.611	0.720	3.173	3.800	0.594	1.023	0.175	16.497
Prev(%)	52.318	0.000	84.615	90.411	97.987	94.615	98.810	98.667	100.000	65.000	57.471	49.008	67.816	69.585	56.338	62.162	31.579	84.967

HMP 16S RefSeq (V3-V5) (not published)

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Notes:
No data – the v3v5 region of the 16S rRNA gene does not distinguish this species from its close relatives.

Dewhirst (35x9) (not published)

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Notes:
Reads equally close to S. salivarius and S. vestibularis were assigned to S. salivarius.

Reads equally close to S. thermophilus and S. salivarius were assigned to S. salivarius.

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA
Avg (%)	0.534	0.753	5.168	4.966	10.861	8.877	11.229	9.229	7.976	0.019
10^thp	0.011	0.009	0.028	0.237	1.000	0.110	0.929	0.732	0.126	0.000
90^thp	1.264	0.870	15.235	11.465	25.906	24.976	24.783	21.633	21.726	0.042
Stdev	1.380	2.667	10.869	6.590	10.119	11.032	9.608	8.521	9.013	0.053
Prev(%)	95.946	100.000	100.000	100.000	100.000	100.000	100.000	100.000	100.000	20.000

HMP Metaphlan (not published)

No Notes

	SUBP	SUPP	PERIO	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	RAF	VIN	MVA	PFO	STO
Avg (%)	0.003	0.025	0.006	0.051	0.648	0.790	0.882	1.586	1.942	4.132	0.030	0.002	0.002	0.000	0.035	0.036	0.034	0.028
10^thp	0.000	0.000	0.000	0.000	0.000	0.790	0.007	0.400	0.248	0.345	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
90^thp	0.000	0.010	0.007	0.116	1.595	0.790	2.206	3.165	4.554	9.305	0.000	0.007	0.000	0.000	0.000	0.007	0.000	0.000
Stdev	0.012	0.283	0.024	0.124	1.218	0.000	1.023	1.279	1.790	4.102	0.207	0.005	0.009	0.000	0.115	0.133	0.317	0.463
Prev(%)	8.333	13.636	12.500	41.176	82.979	100.000	87.500	100.000	96.000	98.122	7.658	12.500	6.250	0.000	9.091	14.286	7.576	8.545

Eren V1-V3 www.pnas.org

** View Notes (mouse over) **

Notes:
reads equally close to S. salivarius and S. vestibularis were assigned to S.salivarius, except for oligotypes V1V3_291 and V1V3_333 which were assigned to S. vestibularis

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	0.142	0.089	4.164	2.753	6.962	2.943	7.953	7.864	8.944	0.017
10^thp	0.000	0.000	0.000	0.100	0.531	0.269	0.631	0.661	0.987	0.000
90^thp	0.200	0.176	12.098	6.186	18.603	7.568	19.212	15.792	20.218	0.052
Stdev	0.607	0.207	11.092	5.269	8.264	3.174	8.235	8.315	8.324	0.042
Prev(%)	54.545	58.442	76.623	94.805	100.000	94.805	98.701	98.701	98.701	24.675

Eren V3-V5 www.pnas.org

** View Notes (mouse over) **

Notes:
Reads equally close to S. salivarius, S. thermophilus, and S. vestibularis were assigned to S. salivarius.

Reads equally close to S. salivarius, S. thermophilus, S. vestibularis, and S. anginosus were assigned half to S. salivarius and half to S. anginosus.

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	0.117	0.069	2.494	2.493	6.986	2.937	6.725	6.045	8.527	0.013
10^thp	0.000	0.000	0.000	0.069	0.517	0.239	0.447	0.345	0.550	0.000
90^thp	0.202	0.188	5.613	6.316	18.004	7.123	16.566	12.896	21.850	0.040
Stdev	0.507	0.140	7.990	4.513	8.430	3.622	6.849	7.459	8.792	0.030
Prev(%)	43.919	50.000	74.324	95.270	98.649	98.649	98.649	97.973	98.649	26.573

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