Species: Streptococcus thermophilus (HMT-152)
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Prev - Prevalence
10thp - 10th percentile
90thp - 90th percentile
ND - less than 0.001%
Body Site Legend:
| SUBP-- Subgingival Plaque |
| SUPP -- Supragingival Plaque |
| PERIO -- Periodontal |
| AKE -- Attached Keratinized Gingiva |
| BMU -- Buccal Mucosa |
| HPA -- Hard Palate |
| SAL -- Saliva |
| THR -- Throat |
| PTO -- Palatine Tonsils |
| TDO -- Tongue Dorsum |
| ANA -- Anterior Nares |
| LRC -- L_Retroauricular Crease |
| RRC -- R_Retroauricular Crease |
| LAF -- L_Antecubital Fossa |
| RAF -- R_Antecubital Fossa |
| VIN -- Vaginal Introitus |
| MVA -- Mid Vagina |
| PFO -- Posterior Fornix |
| STO -- Stool |
Prev - Prevalence
10thp - 10th percentile
90thp - 90th percentile
ND - less than 0.001%
HMP 16S RefSeq (V1-V3) (not published)
No Notes
| SUBP | SUPP | AKE | BMU | HPA | SAL | THR | PTO | TDO | ANA | LRC | RRC | LAF | RAF | VIN | MVA | PFO | STO | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Avg (%) | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.070 | 0.021 | 0.056 | 0.624 | 0.122 | 0.000 | 0.000 | 0.000 | 0.000 |
| 10thp | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| 90thp | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.092 | 0.035 | 0.032 | 0.243 | 0.241 | 0.000 | 0.000 | 0.000 | 0.000 |
| Stdev | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.300 | 0.103 | 0.421 | 7.031 | 0.609 | 0.000 | 0.000 | 0.000 | 0.000 |
| Prev(%) | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 23.667 | 20.115 | 19.263 | 33.333 | 29.032 | 0.000 | 0.000 | 0.000 | 0.000 |
HMP 16S RefSeq (V3-V5) (not published)
** View Notes (mouse over) **
Notes:
No data – the v3v5 region of the 16S rRNA gene does not distinguish this species from its close relatives.
No data – the v3v5 region of the 16S rRNA gene does not distinguish this species from its close relatives.
Dewhirst (35x9) (not published)
** View Notes (mouse over) **
Notes:
Reads equally close to S. thermophilus and S. salivarius were assigned to S. salivarius.
Reads equally close to S. thermophilus and S. salivarius were assigned to S. salivarius.
| SUBP | SUPP | AKE | BMU | HPA | SAL | THR | PTO | TDO | ANA | |
|---|---|---|---|---|---|---|---|---|---|---|
| Avg (%) | 0.009 | 0.011 | 0.050 | 0.062 | 0.072 | 0.047 | 0.101 | 0.066 | 0.042 | 0.296 |
| 10thp | 0.000 | 0.000 | 0.000 | 0.000 | 0.006 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| 90thp | 0.027 | 0.017 | 0.151 | 0.140 | 0.150 | 0.141 | 0.104 | 0.110 | 0.054 | 0.015 |
| Stdev | 0.018 | 0.033 | 0.109 | 0.105 | 0.080 | 0.067 | 0.409 | 0.205 | 0.151 | 1.308 |
| Prev(%) | 52.703 | 50.000 | 53.488 | 85.714 | 96.429 | 76.000 | 81.818 | 87.097 | 80.000 | 15.000 |
HMP Metaphlan (not published)
No Notes
| SUBP | SUPP | PERIO | AKE | BMU | HPA | SAL | THR | PTO | TDO | ANA | LRC | RRC | RAF | VIN | MVA | PFO | STO | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Avg (%) | 0.000 | 0.000 | 0.000 | 0.000 | 0.008 | 0.000 | 0.020 | 0.000 | 0.000 | 0.001 | 0.017 | 0.006 | 0.007 | 0.000 | 0.000 | 0.000 | 0.000 | 0.003 |
| 10thp | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| 90thp | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.048 | 0.000 | 0.000 | 0.000 | 0.000 | 0.007 | 0.019 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| Stdev | 0.000 | 0.003 | 0.000 | 0.000 | 0.106 | 0.000 | 0.057 | 0.000 | 0.000 | 0.011 | 0.134 | 0.023 | 0.020 | 0.000 | 0.000 | 0.000 | 0.005 | 0.013 |
| Prev(%) | 0.000 | 0.758 | 0.000 | 0.000 | 2.660 | 0.000 | 12.500 | 0.000 | 0.000 | 2.582 | 3.153 | 12.500 | 18.750 | 0.000 | 0.000 | 0.000 | 0.505 | 8.182 |
Eren V1-V3 www.pnas.org
No Notes
Eren V3-V5 www.pnas.org
No Notes
