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Taxonomy: V4.0   |  16S rRNA RefSeq: V16.01   |  Genomic RefSeq: V11.01
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Paludibacteraceae [G1] bacterium HMT-274 (HMT-274)
Bacteria;Bacteroidota;Bacteroidia;Bacteroidales;Paludibacteraceae;Paludibacteraceae [G1] bacterium HMT-274

Taxon Description: Bacteroidetes bacterium Oral taxon 274 strain F0058 has been isolated from a human subject by the Moore's Laboratory in November 1984. The subject was a 39 year old American black male. The bacteria was isolated from the subgingival oral biofilm at a site with moderate periodontitis. The bacteria was grown in anaerobic conditions. The partial 16S ribosomal RNA gene was deposited to GenBank under the reference FJ577256. The strain is available at www.bei.org under the reference HM-4. This strain is part of the reference strains for the oral section of the Human Microbiome Project.
Classification:
Bracketed letters indicate
that the taxonomic name at this
level has not been established.
  • Examples:
  • C1 – First Unnamed Class
  • O1 – First Unnamed Order
  • F2 – Second Unnamed Family
  • G3 – Third Unnamed Genus
Domain: Bacteria
Phylum: Bacteroidota
Class: Bacteroidia
Order: Bacteroidales
Family: Paludibacteraceae
Genus: Paludibacteraceae [G1]
Species:bacterium HMT-274
Bacterial Name: Paludibacteraceae [G1] bacterium HMT-274
Naming Status: Unnamed
Cultivation Status: Cultivated
Body Site (or Source): (in beta) Primary: Oral (Abundance: High)
Type/Reference Strain: F0058
Former Names or Synonyms:
Oral Clone AU126 [1-3]
Oral Strain KCL-W5603
Oral Strain TFI-F0058
Phylum: Bacteroidetes
16S rRNA Reference Sequences: RefSeq-ID(s)      [View Taxon in RefSeq Tree]
HMT-274_16S004631 Show Sequence
HMT-274_16S006297 Show Sequence
HMT-274_16S006752 Show Sequence

Download latest 16S rRNA reference gene sequences.
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Number of
Genome Sequences:		 3 See List
Pangenome(s): No Pangenomes Available.
Microbial Ecology Abundance/Prevalence
Proteomics:
NCBI Taxon ID: 171549 [Link to NCBI]
LPSN.dsmz.de: https://lpsn.dsmz.de/family/Paludibacteraceae
PubMed Searches: Status: Unnamed
Phylogenetic Trees:
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View in 16S rRNA gene tree
Disease Associations: Present in 20% of subgingival sites in healthy subjects and 76% of subgingival sites in periodontitis subjects with a prevalence ratio of 3.85 This disease association is higher thatn that of T. denticola P. gingivalis or T. forsythensis [2]
Prevalence and Source: 26 clones found in libraries from 7 subjectsPresent in 20% of subgingival sites in healthy subjects and 76% of subgingival sites in periodontitis subjects with a prevalence ratio of 3.85 This disease association is higher than that of T. denticola P. gingivalis or T. forsythensis [2]
Phenotypic Characteristics: Presumptively Gram negative Presumptively anaerobic
References:
[1] Li CL, Liang JP, Jiang YT. Association of uncultivated oral phylotypes AU126 and X112 with periodontitis. Oral Dis. 2006 Jul;12(4):371-4
[2] Paster BJ, Boches SK, Galvin JL, Ericson RE, Lau CN, Levanos VA, Sahasrabudhe A, Dewhirst FE. Bacterial diversity in human subgingival plaque. J Bacteriol. 2001 Jun;183(12):3770-83
[3] Kumar PS, Griffen AL, Barton JA, Paster BJ, Moeschberger ML, Leys EJ. New bacterial species associated with chronic periodontitis. J Dent Res. 2003 May;82(5):338-44