HOMD ::Species:Streptococcus sanguinis

Species: Streptococcus sanguinis (HMT-758)

Full Lineage: Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus; Streptococcus sanguinis Each rank name is a link to abundance plots at that rank:

LINKS: Ecology Home | HMT-758: Body Sites Data | HMT-758: Taxon Description | Life Page: Streptococcus sanguinis

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Oral:

SUBP-- Subgingival Plaque

SUPP -- Supragingival Plaque

PERIO -- Periodontal

AKE -- Attached Keratinized Gingiva

BMU -- Buccal Mucosa

HPA -- Hard Palate

SAL -- Saliva

THR -- Throat

PTO -- Palatine Tonsils

TDO -- Tongue Dorsum

Nasal:

ANA -- Anterior Nares

Skin:

LRC -- L_Retroauricular Crease

RRC -- R_Retroauricular Crease

LAF -- L_Antecubital Fossa

RAF -- R_Antecubital Fossa

Vaginal:

VIN -- Vaginal Introitus

MVA -- Mid Vagina

PFO -- Posterior Fornix

Gut:

STO -- Stool

Prev - Prevalence
10^thp - 10^th percentile
90^thp - 90^th percentile
ND - less than 0.001%

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HMP 16S RefSeq (V1-V3) (not published)

** View Notes (mouse over) **

Notes:
Reads equidistant to HMT-071 and HMT-758 were assigned to each taxon in proportion to the abundance of HMT-071 and HMT-758 individually at these sites (AKE,SUBP,SUPP).

Some of the reads equidistant from these taxa (071-398-758) are included in HMT-758 because they are too close to differentiate at this site (SUBP).

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	3.197	4.167	1.191	1.044	0.323	0.584	0.150	0.140	0.027	0.110	0.078	0.083	0.259	0.247	0.000	0.000	0.000	0.000
10^thp	0.364	0.797	0.031	0.063	0.010	0.014	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
90^thp	7.185	8.733	2.778	2.585	0.759	1.319	0.348	0.202	0.074	0.307	0.140	0.124	0.829	0.755	0.000	0.000	0.000	0.000
Stdev	3.963	3.869	2.958	1.742	0.514	0.734	0.351	0.570	0.037	0.259	0.362	0.434	0.628	0.612	0.000	0.000	0.000	0.000
Prev(%)	99.338	99.338	95.804	95.890	91.275	90.000	69.940	73.333	69.677	52.000	34.770	34.278	46.552	47.465	0.000	0.000	0.000	0.000

HMP 16S RefSeq (V3-V5) (not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	3.742	6.025	2.391	2.399	0.842	1.085	0.338	0.316	0.079	0.250	0.221	0.238	0.496	0.538	0.000	0.000	0.000	0.009
10^thp	0.382	1.238	0.026	0.205	0.035	0.137	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
90^thp	8.905	12.650	7.017	6.453	1.921	2.379	0.889	0.454	0.200	0.541	0.330	0.449	1.230	1.694	0.000	0.000	0.000	0.000
Stdev	4.626	5.313	4.039	3.113	1.359	1.335	1.025	1.518	0.225	0.766	1.070	0.990	1.081	1.202	0.000	0.000	0.000	0.103
Prev(%)	99.012	100.000	92.346	98.511	92.583	97.917	72.586	81.509	63.504	54.406	43.312	39.198	61.379	55.333	0.000	0.000	0.000	7.299

Dewhirst (35x9) (not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA
Avg (%)	2.005	3.515	1.524	1.209	0.733	0.456	0.159	0.122	0.298	0.011
10^thp	0.047	0.343	0.014	0.135	0.129	0.086	0.025	0.014	0.020	0.000
90^thp	3.889	7.476	2.371	2.569	1.559	1.042	0.384	0.347	0.446	0.049
Stdev	4.749	3.427	3.893	1.019	0.649	0.567	0.178	0.138	0.762	0.029
Prev(%)	100.000	100.000	100.000	100.000	100.000	100.000	96.970	100.000	97.500	15.000

HMP Metaphlan (not published)

No Notes

	SUBP	SUPP	PERIO	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	RAF	VIN	MVA	PFO	STO
Avg (%)	2.529	3.055	1.186	1.730	1.606	0.040	0.469	0.010	0.063	0.036	0.058	0.093	0.028	0.610	0.000	0.172	0.008	0.001
10^thp	0.334	0.630	0.000	0.010	0.125	0.040	0.064	0.000	0.000	0.000	0.000	0.000	0.000	0.610	0.000	0.000	0.000	0.000
90^thp	4.634	6.390	5.034	6.122	3.500	0.040	0.829	0.025	0.130	0.100	0.059	0.044	0.038	0.610	0.000	0.000	0.000	0.000
Stdev	4.113	2.569	2.544	2.556	2.159	0.000	0.311	0.029	0.176	0.078	0.486	0.295	0.101	0.000	0.000	0.644	0.067	0.022
Prev(%)	100.000	99.747	54.167	94.118	97.606	100.000	100.000	12.500	44.000	53.052	13.964	33.333	25.000	100.000	0.000	7.143	2.020	0.727

Eren V1-V3 www.pnas.org

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	3.172	4.048	0.778	0.912	0.494	0.585	0.252	0.212	0.271	0.002
10^thp	0.394	0.656	0.042	0.141	0.088	0.040	0.000	0.000	0.000	0.000
90^thp	7.025	7.776	2.117	2.283	1.262	1.343	0.620	0.636	0.791	0.000
Stdev	3.898	4.194	1.330	1.159	0.589	0.572	0.387	0.320	0.769	0.007
Prev(%)	100.000	100.000	98.701	98.701	98.701	89.610	88.312	83.117	61.039	5.195

Eren V3-V5 www.pnas.org

** View Notes (mouse over) **

Notes:
Reads equally close to S. sanguinis and S. agalactiae were assigned to S. sanguinis.

Reads equally close to S. agalactiae, S. infantis clade 638, S. oralis subsp. dentisani clade 058, S. pyogenes, S. sanguinis, and S. sp. HMT 061 and 074 were assigned one-fifth each to S. infantis clade 638, S. oralis subsp. dentisani clade 058, S. sanguinis, and S. sp. HMT 061 and 074.

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	3.072	4.670	0.568	1.020	0.495	0.772	0.255	0.201	0.099	0.001
10^thp	0.206	0.785	0.000	0.085	0.049	0.125	0.000	0.000	0.000	0.000
90^thp	6.238	9.009	1.264	2.218	1.097	1.530	0.746	0.379	0.203	0.000
Stdev	4.457	4.924	1.621	1.716	0.762	0.917	0.417	0.586	0.230	0.007
Prev(%)	96.622	100.000	87.162	97.973	96.622	97.297	83.108	84.459	86.486	4.196

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