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Taxonomy: V4.3   |  16S rRNA RefSeq: V16.03   |  Genomic RefSeq: V11.03   |  Viruses: V1.2

PROKKAGenome Explorer: Pseudomonas otitidis (GCA_011397855.1)

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PROKKA Annotations for GCA_011397855.1
Genome Selected: Pseudomonas otitidis
ContigsBases CDSrRNA tmRNAtRNA
1 6089454 5480 12 1 74
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Annotation Table [page:12]    |    Number of Records Found: 5650 [12 Pages]    |    Previous Page <==> Next Page    |    Jump to Page: [ 1  2  3  4  5  6  7  8  9  10  11  12  ]
Notes:   1- Column headers only sort the current page. 2- Select [NA] or [AA] links to show sequences.
Region Protein-ID Type Genome
Viewer		 Range
(bp)		 Show Sequences
(length) NA / AA		 PROKKA
Gene		 PROKKA
GeneProduct
5501 AP022642.1 GCA_011397855.1_05501 CDS open 5906779-5907846 1068_na     355_aa hypothetical protein
5502 AP022642.1 GCA_011397855.1_05502 CDS open 5907964-5908128 165_na     54_aa rubA1_2 Rubredoxin-1
5503 AP022642.1 GCA_011397855.1_05503 CDS open 5908195-5908767 573_na     190_aa hypothetical protein
5504 AP022642.1 GCA_011397855.1_05504 CDS open 5908850-5909590 741_na     246_aa putative oxidoreductase
5505 AP022642.1 GCA_011397855.1_05505 CDS open 5909748-5910344 597_na     198_aa nsaD 2-hydroxychromene-2-carboxylate isomerase
5506 AP022642.1 GCA_011397855.1_05506 CDS open 5910331-5911539 1209_na     402_aa hypothetical protein
5507 AP022642.1 GCA_011397855.1_05507 CDS open 5911737-5913014 1278_na     425_aa davT 5-aminovalerate aminotransferase DavT
5508 AP022642.1 GCA_011397855.1_05508 CDS open 5913190-5914641 1452_na     483_aa davD_3 Glutarate-semialdehyde dehydrogenase
5509 AP022642.1 tRNA open 5914959-5915035 tRNA-Arg(ccg)
5510 AP022642.1 GCA_011397855.1_05510 CDS open 5915106-5916602 1497_na     498_aa hypothetical protein
5511 AP022642.1 GCA_011397855.1_05511 CDS open 5916663-5917895 1233_na     410_aa tyrP Tyrosine-specific transport protein
5512 AP022642.1 GCA_011397855.1_05512 CDS open 5917974-5919380 1407_na     468_aa puuB_8 Gamma-glutamylputrescine oxidoreductase
5513 AP022642.1 rRNA open 5919638-5919747 5S ribosomal RNA
5514 AP022642.1 rRNA open 5919873-5922761 23S ribosomal RNA
5515 AP022642.1 tRNA open 5922988-5923063 tRNA-Ala(tgc)
5516 AP022642.1 tRNA open 5923090-5923166 tRNA-Ile(gat)
5517 AP022642.1 rRNA open 5923261-5924791 16S ribosomal RNA
5518 AP022642.1 GCA_011397855.1_05518 CDS open 5925283-5926506 1224_na     407_aa uctC Acetyl-CoA:oxalate CoA-transferase
5519 AP022642.1 GCA_011397855.1_05519 CDS open 5926581-5927762 1182_na     393_aa mmgC_6 Acyl-CoA dehydrogenase
5520 AP022642.1 GCA_011397855.1_05520 CDS open 5927943-5928851 909_na     302_aa gcvA_14 Glycine cleavage system transcriptional activator
5521 AP022642.1 GCA_011397855.1_05521 CDS open 5929061-5930827 1767_na     588_aa hypothetical protein
5522 AP022642.1 GCA_011397855.1_05522 CDS open 5930850-5932220 1371_na     456_aa putative protein
5523 AP022642.1 GCA_011397855.1_05523 CDS open 5932353-5934872 2520_na     839_aa malT_5 HTH-type transcriptional regulator MalT
5524 AP022642.1 GCA_011397855.1_05524 CDS open 5935380-5936501 1122_na     373_aa pntAA NAD(P) transhydrogenase subunit alpha part 1
5525 AP022642.1 GCA_011397855.1_05525 CDS open 5936514-5936828 315_na     104_aa pntA NAD(P) transhydrogenase subunit alpha
5526 AP022642.1 GCA_011397855.1_05526 CDS open 5936831-5938267 1437_na     478_aa pntB NAD(P) transhydrogenase subunit beta
5527 AP022642.1 GCA_011397855.1_05527 CDS open 5938349-5938786 438_na     145_aa hypothetical protein
5528 AP022642.1 GCA_011397855.1_05528 CDS open 5938838-5940070 1233_na     410_aa bepC_3 Outer membrane efflux protein BepC
5529 AP022642.1 GCA_011397855.1_05529 CDS open 5940198-5941376 1179_na     392_aa prsE_4 Type I secretion system membrane fusion protein PrsE
5530 AP022642.1 GCA_011397855.1_05530 CDS open 5941439-5943331 1893_na     630_aa apxIB_3 Toxin RTX-I translocation ATP-binding protein
5531 AP022642.1 GCA_011397855.1_05531 CDS open 5944155-5944823 669_na     222_aa uhpA Transcriptional regulatory protein UhpA
5532 AP022642.1 GCA_011397855.1_05532 CDS open 5945021-5951869 6849_na     2282_aa hypothetical protein
5533 AP022642.1 GCA_011397855.1_05533 CDS open 5952456-5952848 393_na     130_aa ompA_2 Outer membrane protein A
5534 AP022642.1 GCA_011397855.1_05534 CDS open 5953154-5960287 7134_na     2377_aa hypothetical protein
5535 AP022642.1 GCA_011397855.1_05535 CDS open 5960459-5961136 678_na     225_aa hypothetical protein
5536 AP022642.1 GCA_011397855.1_05536 CDS open 5961150-5963333 2184_na     727_aa uvrD DNA helicase II
5537 AP022642.1 GCA_011397855.1_05537 CDS open 5963534-5966419 2886_na     961_aa hypothetical protein
5538 AP022642.1 GCA_011397855.1_05538 CDS open 5966403-5967746 1344_na     447_aa hypothetical protein
5539 AP022642.1 GCA_011397855.1_05539 CDS open 5968054-5969493 1440_na     479_aa zwf_2 Glucose-6-phosphate 1-dehydrogenase
5540 AP022642.1 GCA_011397855.1_05540 CDS open 5969650-5970516 867_na     288_aa hexR_2 HTH-type transcriptional regulator HexR
5541 AP022642.1 GCA_011397855.1_05541 CDS open 5970712-5973153 2442_na     813_aa fhuA_4 Ferrichrome outer membrane transporterphage receptor
5542 AP022642.1 GCA_011397855.1_05542 CDS open 5973249-5973962 714_na     237_aa fecR_11 Protein FecR
5543 AP022642.1 GCA_011397855.1_05543 CDS open 5974196-5974714 519_na     172_aa fecI_11 putative RNA polymerase sigma factor FecI
5544 AP022642.1 GCA_011397855.1_05544 CDS open 5974899-5975123 225_na     74_aa hypothetical protein
5545 AP022642.1 GCA_011397855.1_05545 CDS open 5975065-5976027 963_na     320_aa cmpR_9 HTH-type transcriptional activator CmpR
5546 AP022642.1 GCA_011397855.1_05546 CDS open 5976217-5977632 1416_na     471_aa cfiB 2-oxoglutarate carboxylase small subunit
5547 AP022642.1 GCA_011397855.1_05547 CDS open 5977649-5979454 1806_na     601_aa oadA Oxaloacetate decarboxylase alpha chain
5548 AP022642.1 GCA_011397855.1_05548 CDS open 5979989-5980429 441_na     146_aa IMPDH_3 Inosine-5-monophosphate dehydrogenase
5549 AP022642.1 GCA_011397855.1_05549 CDS open 5980436-5980972 537_na     178_aa hypothetical protein
5550 AP022642.1 GCA_011397855.1_05550 CDS open 5981038-5981283 246_na     81_aa hypothetical protein
5551 AP022642.1 GCA_011397855.1_05551 CDS open 5981366-5982448 1083_na     360_aa purK N5-carboxyaminoimidazole ribonucleotide synthase
5552 AP022642.1 GCA_011397855.1_05552 CDS open 5982452-5982943 492_na     163_aa purE N5-carboxyaminoimidazole ribonucleotide mutase
5553 AP022642.1 GCA_011397855.1_05553 CDS open 5983190-5984212 1023_na     340_aa Alcohol dehydrogenase
5554 AP022642.1 GCA_011397855.1_05554 CDS open 5984228-5985154 927_na     308_aa yjiE HTH-type transcriptional regulator YjiE
5555 AP022642.1 GCA_011397855.1_05555 CDS open 5985335-5986759 1425_na     474_aa aspA Aspartate ammonia-lyase
5556 AP022642.1 GCA_011397855.1_05556 CDS open 5987269-5988735 1467_na     488_aa gabR_3 HTH-type transcriptional regulatory protein GabR
5557 AP022642.1 GCA_011397855.1_05557 CDS open 5988832-5989464 633_na     210_aa paiB Protease synthase and sporulation protein PAI 2
5558 AP022642.1 GCA_011397855.1_05558 CDS open 5989493-5989936 444_na     147_aa hypothetical protein
5559 AP022642.1 GCA_011397855.1_05559 CDS open 5989947-5990624 678_na     225_aa hypothetical protein
5560 AP022642.1 GCA_011397855.1_05560 CDS open 5990804-5993707 2904_na     967_aa hypothetical protein
5561 AP022642.1 GCA_011397855.1_05561 CDS open 5994026-5994727 702_na     233_aa hypothetical protein
5562 AP022642.1 GCA_011397855.1_05562 CDS open 5994756-5995574 819_na     272_aa hypothetical protein
5563 AP022642.1 GCA_011397855.1_05563 CDS open 5995746-5997194 1449_na     482_aa alsT_2 Amino-acid carrier protein AlsT
5564 AP022642.1 GCA_011397855.1_05564 CDS open 5997351-5998340 990_na     329_aa ansA L-asparaginase 1
5565 AP022642.1 GCA_011397855.1_05565 CDS open 5998561-6000054 1494_na     497_aa cat1 Succinyl-CoA:coenzyme A transferase
5566 AP022642.1 GCA_011397855.1_05566 CDS open 6000367-6000582 216_na     71_aa hypothetical protein
5567 AP022642.1 GCA_011397855.1_05567 CDS open 6000816-6001025 210_na     69_aa hypothetical protein
5568 AP022642.1 GCA_011397855.1_05568 CDS open 6001157-6001474 318_na     105_aa hypothetical protein
5569 AP022642.1 GCA_011397855.1_05569 CDS open 6001647-6001967 321_na     106_aa hypothetical protein
5570 AP022642.1 GCA_011397855.1_05570 CDS open 6001978-6003948 1971_na     656_aa hypothetical protein
5571 AP022642.1 misc_RNA open 6005045-6005135 sRNA-Xcc1
5572 AP022642.1 GCA_011397855.1_05572 CDS open 6005173-6005646 474_na     157_aa hypothetical protein
5573 AP022642.1 GCA_011397855.1_05573 CDS open 6005665-6006066 402_na     133_aa hypothetical protein
5574 AP022642.1 GCA_011397855.1_05574 CDS open 6006171-6007088 918_na     305_aa hypothetical protein
5575 AP022642.1 GCA_011397855.1_05575 CDS open 6007357-6008664 1308_na     435_aa citN_2 Citrate transporter
5576 AP022642.1 GCA_011397855.1_05576 CDS open 6008766-6009524 759_na     252_aa hypothetical protein
5577 AP022642.1 GCA_011397855.1_05577 CDS open 6009696-6010886 1191_na     396_aa amiC_3 N-acetylmuramoyl-L-alanine amidase AmiC
5578 AP022642.1 GCA_011397855.1_05578 CDS open 6010937-6011551 615_na     204_aa prfA_2 Peptide chain release factor RF1
5579 AP022642.1 GCA_011397855.1_05579 CDS open 6011551-6012687 1137_na     378_aa rtcB_3 RNA-splicing ligase RtcB
5580 AP022642.1 GCA_011397855.1_05580 CDS open 6012903-6013754 852_na     283_aa hypothetical protein
5581 AP022642.1 GCA_011397855.1_05581 CDS open 6013924-6014838 915_na     304_aa cheB_10 Protein-glutamate methylesteraseprotein-glutamine glutaminase
5582 AP022642.1 GCA_011397855.1_05582 CDS open 6014969-6015700 732_na     243_aa phoU Phosphate-specific transport system accessory protein PhoU
5583 AP022642.1 GCA_011397855.1_05583 CDS open 6015804-6016637 834_na     277_aa pstB Phosphate import ATP-binding protein PstB
5584 AP022642.1 GCA_011397855.1_05584 CDS open 6016717-6018387 1671_na     556_aa hypothetical protein
5585 AP022642.1 GCA_011397855.1_05585 CDS open 6018496-6020784 2289_na     762_aa hypothetical protein
5586 AP022642.1 GCA_011397855.1_05586 CDS open 6020955-6021926 972_na     323_aa pstS Phosphate-binding protein PstS
5587 AP022642.1 GCA_011397855.1_05587 CDS open 6022106-6023410 1305_na     434_aa hypothetical protein
5588 AP022642.1 GCA_011397855.1_05588 CDS open 6023559-6024845 1287_na     428_aa abaF_2 Fosfomycin resistance protein AbaF
5589 AP022642.1 GCA_011397855.1_05589 CDS open 6025139-6025543 405_na     134_aa putative acyl-CoA thioester hydrolase
5590 AP022642.1 GCA_011397855.1_05590 CDS open 6025616-6026524 909_na     302_aa yeaD Putative glucose-6-phosphate 1-epimerase
5591 AP022642.1 GCA_011397855.1_05591 CDS open 6026656-6027510 855_na     284_aa hypothetical protein
5592 AP022642.1 GCA_011397855.1_05592 CDS open 6027800-6028279 480_na     159_aa elaA Protein ElaA
5593 AP022642.1 GCA_011397855.1_05593 CDS open 6028404-6028811 408_na     135_aa hypothetical protein
5594 AP022642.1 GCA_011397855.1_05594 CDS open 6028823-6030586 1764_na     587_aa kefB Glutathione-regulated potassium-efflux system protein KefB
5595 AP022642.1 GCA_011397855.1_05595 CDS open 6030759-6031424 666_na     221_aa mcbR HTH-type transcriptional regulator McbR
5596 AP022642.1 GCA_011397855.1_05596 CDS open 6031695-6033086 1392_na     463_aa hemL_2 Glutamate-1-semialdehyde 2%2C1-aminomutase
5597 AP022642.1 GCA_011397855.1_05597 CDS open 6033181-6034548 1368_na     455_aa puuA_5 Gamma-glutamylputrescine synthetase PuuA
5598 AP022642.1 GCA_011397855.1_05598 CDS open 6034597-6035868 1272_na     423_aa hypothetical protein
5599 AP022642.1 GCA_011397855.1_05599 CDS open 6036053-6036547 495_na     164_aa hypothetical protein
5600 AP022642.1 GCA_011397855.1_05600 CDS open 6036610-6037134 525_na     174_aa hypothetical protein
5601 AP022642.1 GCA_011397855.1_05601 CDS open 6037232-6037597 366_na     121_aa hypothetical protein
5602 AP022642.1 GCA_011397855.1_05602 CDS open 6037856-6038725 870_na     289_aa pdxY Pyridoxal kinase PdxY
5603 AP022642.1 tRNA open 6039889-6039969 tRNA-Pro(cgg)
5604 AP022642.1 GCA_011397855.1_05604 CDS open 6040411-6040824 414_na     137_aa hypothetical protein
5605 AP022642.1 GCA_011397855.1_05605 CDS open 6040835-6041206 372_na     123_aa hypothetical protein
5606 AP022642.1 GCA_011397855.1_05606 CDS open 6041203-6042081 879_na     292_aa hypothetical protein
5607 AP022642.1 GCA_011397855.1_05607 CDS open 6042252-6044009 1758_na     585_aa dctB_2 C4-dicarboxylate transport sensor protein DctB
5608 AP022642.1 GCA_011397855.1_05608 CDS open 6044006-6045352 1347_na     448_aa dctD_3 C4-dicarboxylate transport transcriptional regulatory protein DctD
5609 AP022642.1 GCA_011397855.1_05609 CDS open 6045775-6046554 780_na     259_aa hypothetical protein
5610 AP022642.1 GCA_011397855.1_05610 CDS open 6047046-6048353 1308_na     435_aa kgtP Alpha-ketoglutarate permease
5611 AP022642.1 GCA_011397855.1_05611 CDS open 6048786-6049763 978_na     325_aa yeiR Zinc-binding GTPase YeiR
5612 AP022642.1 GCA_011397855.1_05612 CDS open 6049994-6050380 387_na     128_aa hypothetical protein
5613 AP022642.1 GCA_011397855.1_05613 CDS open 6050530-6051174 645_na     214_aa hypothetical protein
5614 AP022642.1 GCA_011397855.1_05614 CDS open 6051174-6052379 1206_na     401_aa yciC_2 Putative metal chaperone YciC
5615 AP022642.1 GCA_011397855.1_05615 CDS open 6052412-6052828 417_na     138_aa dksA_2 RNA polymerase-binding transcription factor DksA
5616 AP022642.1 GCA_011397855.1_05616 CDS open 6052904-6053794 891_na     296_aa folE2 GTP cyclohydrolase FolE2
5617 AP022642.1 GCA_011397855.1_05617 CDS open 6054050-6055372 1323_na     440_aa oprD_6 Porin D
5618 AP022642.1 GCA_011397855.1_05618 CDS open 6055513-6055719 207_na     68_aa hypothetical protein
5619 AP022642.1 GCA_011397855.1_05619 CDS open 6055941-6056687 747_na     248_aa hypothetical protein
5620 AP022642.1 GCA_011397855.1_05620 CDS open 6056730-6059882 3153_na     1050_aa czcA Cobalt-zinc-cadmium resistance protein CzcA
5621 AP022642.1 GCA_011397855.1_05621 CDS open 6059895-6061085 1191_na     396_aa czcB Cobalt-zinc-cadmium resistance protein CzcB
5622 AP022642.1 GCA_011397855.1_05622 CDS open 6061076-6061237 162_na     53_aa hypothetical protein
5623 AP022642.1 GCA_011397855.1_05623 CDS open 6061241-6062491 1251_na     416_aa czcC Cobalt-zinc-cadmium resistance protein CzcC
5624 AP022642.1 GCA_011397855.1_05624 CDS open 6062910-6063584 675_na     224_aa czcR_2 Transcriptional activator protein CzcR
5625 AP022642.1 GCA_011397855.1_05625 CDS open 6063581-6064960 1380_na     459_aa czcS Sensor protein CzcS
5626 AP022642.1 GCA_011397855.1_05626 CDS open 6065059-6066222 1164_na     387_aa yjfC_2 Putative acid--amine ligase YjfC
5627 AP022642.1 GCA_011397855.1_05627 CDS open 6066190-6066939 750_na     249_aa hypothetical protein
5628 AP022642.1 GCA_011397855.1_05628 CDS open 6066926-6067789 864_na     287_aa hypothetical protein
5629 AP022642.1 GCA_011397855.1_05629 CDS open 6067796-6068584 789_na     262_aa hypothetical protein
5630 AP022642.1 GCA_011397855.1_05630 CDS open 6068741-6070573 1833_na     610_aa glmS Glutamine--fructose-6-phosphate aminotransferase [isomerizing]
5631 AP022642.1 GCA_011397855.1_05631 CDS open 6070585-6071355 771_na     256_aa srlR Glucitol operon repressor
5632 AP022642.1 GCA_011397855.1_05632 CDS open 6071498-6072859 1362_na     453_aa glmU Bifunctional protein GlmU
5633 AP022642.1 GCA_011397855.1_05633 CDS open 6072959-6073384 426_na     141_aa atpC ATP synthase epsilon chain
5634 AP022642.1 GCA_011397855.1_05634 CDS open 6073428-6074804 1377_na     458_aa atpD ATP synthase subunit beta
5635 AP022642.1 GCA_011397855.1_05635 CDS open 6074835-6075695 861_na     286_aa atpG ATP synthase gamma chain
5636 AP022642.1 GCA_011397855.1_05636 CDS open 6075746-6077290 1545_na     514_aa atpA ATP synthase subunit alpha
5637 AP022642.1 GCA_011397855.1_05637 CDS open 6077312-6077848 537_na     178_aa atpH_1 ATP synthase subunit delta
5638 AP022642.1 GCA_011397855.1_05638 CDS open 6077861-6078331 471_na     156_aa atpF ATP synthase subunit b
5639 AP022642.1 GCA_011397855.1_05639 CDS open 6078380-6078637 258_na     85_aa atpH_2 ATP synthase subunit c
5640 AP022642.1 GCA_011397855.1_05640 CDS open 6078821-6079690 870_na     289_aa atpB ATP synthase subunit a
5641 AP022642.1 GCA_011397855.1_05641 CDS open 6079707-6080114 408_na     135_aa hypothetical protein
5642 AP022642.1 GCA_011397855.1_05642 CDS open 6080262-6081134 873_na     290_aa parB putative chromosome-partitioning protein ParB
5643 AP022642.1 GCA_011397855.1_05643 CDS open 6081144-6081932 789_na     262_aa parA Chromosome partitioning protein ParA
5644 AP022642.1 GCA_011397855.1_05644 CDS open 6081950-6082597 648_na     215_aa rsmG Ribosomal RNA small subunit methyltransferase G
5645 AP022642.1 GCA_011397855.1_05645 CDS open 6082597-6084489 1893_na     630_aa mnmG tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG
5646 AP022642.1 GCA_011397855.1_05646 CDS open 6085006-6086373 1368_na     455_aa mnmE tRNA modification GTPase MnmE
5647 AP022642.1 GCA_011397855.1_05647 CDS open 6086445-6088127 1683_na     560_aa yidC Membrane protein insertase YidC
5648 AP022642.1 GCA_011397855.1_05648 CDS open 6088130-6088375 246_na     81_aa yidD Putative membrane protein insertion efficiency factor
5649 AP022642.1 GCA_011397855.1_05649 CDS open 6088368-6088769 402_na     133_aa rnpA Ribonuclease P protein component
5650 AP022642.1 GCA_011397855.1_05650 CDS open 6088787-6088921 135_na     44_aa rpmH 50S ribosomal protein L34