Genome Meta Information: Escherichia coli SE15 (GCA_000010485.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_000010485.1 | ||
| HOMD Taxon-ID | HMT-0574 | ||
| Species Name (in use by HOMD) | Escherichia coli | ||
| Organism Name (as deposited) | HMT-574 Escherichia coli SE15 | ||
| Strain or Isolate | SE15 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia; s__Escherichia coli |
||
| Sequencing Technology | |||
| Genome Coverage | |||
| Contigs |
|
||
| Total Sequence Length | 4,839,683 (bp) | ||
| GC Percentage | 50.75 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/010/485/GCA_000010485.1_ASM1048v1 | ||
| CDS | 4438 | ||
| Genes | 4767 | ||
| mRNA | 4767 | ||
| misc RNA | 220 | ||
| rRNA | 22 | ||
| tRNA | 86 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 99.56 % | ||
| CheckM Completeness | 98.7 % | ||
| CheckM Contamination | 0.51 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM1048v1 |
| GenBank Assembly Accession | GCA_000010485.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_000010485.1 [NCBI] |
| BioSample | SAMD00060923 [NCBI] |
| BioProject | PRJDA19053 [NCBI] |
| Submitter | Kitasato University |
| Submission Date | 2016-09-28T01:00:30.305 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 431946 |
| Isolation Source | |
| Geo Location | |
