Genome Meta Information: Gardnerella swidsinskii 409-05 (GCA_000025205.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_000025205.1 | ||
| HOMD Taxon-ID | HMT-0868 | ||
| Species Name (in use by HOMD) | Gardnerella swidsinskii | ||
| Organism Name (as deposited) | HMT-868 Gardnerella swidsinskii 409-05 | ||
| Strain or Isolate | 409-05 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Bifidobacteriaceae;g__Bifidobacterium; s__Bifidobacterium swidsinskii |
||
| Sequencing Technology | |||
| Genome Coverage | |||
| Contigs |
|
||
| Total Sequence Length | 1,617,545 (bp) | ||
| GC Percentage | 42.02 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/025/205/GCA_000025205.1_ASM2520v1 | ||
| CDS | 1267 | ||
| Genes | 1334 | ||
| mRNA | 1334 | ||
| misc RNA | 15 | ||
| rRNA | 6 | ||
| tRNA | 45 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 88.16 % | ||
| CheckM Completeness | 99.26 % | ||
| CheckM Contamination | 0.47 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM2520v1 |
| GenBank Assembly Accession | GCA_000025205.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_000025205.1 [NCBI] |
| BioSample | SAMN02299422 [NCBI] |
| BioProject | PRJNA31001 [NCBI] |
| Submitter | J. Craig Venter Institute |
| Submission Date | 2013-08-02T12:07:39.393 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 553190 |
| Isolation Source | |
| Geo Location | not determined |
