Genome Meta Information: Abiotrophia defectiva ATCC 49176 (GCA_000160075.2)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_000160075.2 | ||
| HOMD Taxon-ID | HMT-389 | ||
| Species Name (in use by HOMD) | Abiotrophia defectiva | ||
| Organism Name (as deposited) | HMT-389 Abiotrophia defectiva ATCC 49176 | ||
| Strain or Isolate | ATCC 49176 | ||
| GTDB (V) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Aerococcaceae;g__Abiotrophia; s__Abiotrophia defectiva |
||
| Sequencing Technology | 454 | ||
| Genome Coverage | 34.5x | ||
| Contigs |
|
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| Total Sequence Length | 2,043,439 (bp) | ||
| GC Percentage | 47.02 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/160/075/GCA_000160075.2_ASM16007v2 | ||
| CDS | 1843 | ||
| Genes | 1920 | ||
| mRNA | 1920 | ||
| misc RNA | 21 | ||
| rRNA | 8 | ||
| tRNA | 47 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 99.99 % | ||
| CheckM Completeness | 98.46 % | ||
| CheckM Contamination | 0 % | ||
| CheckM2 Completeness | 99.02 % | ||
| CheckM2 Contamination | 0.06 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM16007v2 |
| GenBank Assembly Accession | GCA_000160075.2 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_000160075.2 [NCBI] |
| BioSample | SAMN02436801 [NCBI] |
| BioProject | PRJNA33011 [NCBI] |
| Submitter | Washington University Genome Sequencing Center |
| Submission Date | 2013-12-04T15:03:53.573 |
| Assembly Method | |
| Assembly Level | Scaffold |
| Sequencing Status | |
| WGS Project | ACIN03 |
| NCBI TaxID | 592010 |
| Isolation Source | blood |
| Geo Location | |
