Genome Meta Information: Actinomyces oris C505 (GCA_000175315.3)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_000175315.3 | ||
| HOMD Taxon-ID | HMT-893 | ||
| Species Name (in use by HOMD) | Actinomyces oris | ||
| Organism Name (as deposited) | HMT-893 Actinomyces oris clade-893 C505 | ||
| Strain or Isolate | C505 | ||
| GTDB (V) Taxonomy |
d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Actinomyces; s__Actinomyces oris |
||
| Sequencing Technology | 454 | ||
| Genome Coverage | 28.0x | ||
| Contigs |
|
||
| Total Sequence Length | 3,134,496 (bp) | ||
| GC Percentage | 68.68 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/175/315/GCA_000175315.3_Acti_vis_C505_V3 | ||
| CDS | 2594 | ||
| Genes | 2667 | ||
| mRNA | 2667 | ||
| misc RNA | 15 | ||
| rRNA | 5 | ||
| tRNA | 52 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 88.26 % | ||
| CheckM Completeness | 98.82 % | ||
| CheckM Contamination | 0.47 % | ||
| CheckM2 Completeness | 99.97 % | ||
| CheckM2 Contamination | 0.16 % | ||
| CRISPR-cas | 3 Contigs [View] [HOMD FTP] | ||
| Pangenomes |
1)
OpenAnvi`o (Interactive)
OpenSVG (Preview)
2) OpenAnvi`o (Interactive) OpenSVG (Preview) |
||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | Acti_vis_C505_V3 |
| GenBank Assembly Accession | GCA_000175315.3 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_000175315.3 [NCBI] |
| BioSample | SAMN02463750 [NCBI] |
| BioProject | PRJNA38743 [NCBI] |
| Submitter | Broad Institute |
| Submission Date | 2013-12-18T11:11:35.043 |
| Assembly Method | |
| Assembly Level | Scaffold |
| Sequencing Status | |
| WGS Project | ACRE02 |
| NCBI TaxID | 562973 |
| Isolation Source | missing |
| Geo Location | not determined |
