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Genome Meta Information:
Arthrospira
platensis
Paraca (GCA_000175415.3)
| HOMD Genome-ID |
GCA_000175415.3
|
| HOMD Taxon-ID |
HMT-229
|
| Species Name (in use by HOMD) |
Arthrospira platensis
|
| Organism Name (as deposited) |
HMT-229 Arthrospira platensis Paraca
|
| Strain or Isolate |
Paraca
|
GTDB (V)
Taxonomy |
d__Bacteria;p__Cyanobacteriota;c__Cyanobacteriia;o__Cyanobacteriales;f__Microcoleaceae;g__Limnospira;
s__Limnospira platensis |
| Sequencing Technology |
Illumina HiSeq
|
| Genome Coverage |
36.0x
|
| Contigs |
Number of Contigs: 268
|
[Open
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Sequence]
[Linkout to
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|
|
| Total Sequence Length |
6,501,886 (bp) |
| GC Percentage |
44.31
|
| MAG |
|
| NCBI FTP URL |
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/175/415/GCA_000175415.3_ASM17541v3
|
| CDS |
6076
|
| Genes |
6452
|
| mRNA |
6452
|
| misc RNA |
322
|
| rRNA |
6
|
| tRNA |
47
|
| tmRNA |
1
|
| ANI (Average Nucluotide Identity) |
99.44 %
|
| CheckM Completeness |
99.34 %
|
| CheckM Contamination |
0 %
|
| CheckM2 Completeness |
100 %
|
| CheckM2 Contamination |
0.09 %
|
| CRISPR-cas |
2 Contigs
[View]
[HOMD FTP]
|
| Pangenomes |
1)
OpenAnvi`o (Interactive)
OpenSVG (Preview)
|
| Genome Assembly Name |
ASM17541v3
|
| GenBank Assembly Accession |
GCA_000175415.3
[NCBI]
[GTDB]
|
| RefSeq Assembly Accession |
GCF_000175415.3
[NCBI]
|
| BioSample |
SAMN02344446
[NCBI]
|
| BioProject |
PRJNA34793
[NCBI]
|
| Submitter |
University of Applied Sciences of Western Switzerland
|
| Submission Date |
2013-09-04T08:50:02.890
|
| Assembly Method |
|
| Assembly Level |
Contig
|
| Sequencing Status |
|
| WGS
Project |
ACSK03
|
| NCBI TaxID |
634502
|
| Isolation Source |
pure sub-culture from non-axenic industrial culture provided by Biorigin
|
| Geo Location |
Switzerland
|
