Genome Meta Information: Treponema vincentii ATCC 35580 (GCA_000175895.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_000175895.1 | ||
| HOMD Taxon-ID | HMT-0029 | ||
| Species Name (in use by HOMD) | Treponema vincentii | ||
| Organism Name (as deposited) | HMT-029 Treponema vincentii clade-029 ATCC 35580 | ||
| Strain or Isolate | ATCC 35580 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Spirochaetota;c__Spirochaetia;o__Treponematales;f__Treponemataceae;g__Treponema; s__Treponema vincentii |
||
| Sequencing Technology | |||
| Genome Coverage | |||
| Contigs |
|
||
| Total Sequence Length | 2,514,590 (bp) | ||
| GC Percentage | 45.69 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/175/895/GCA_000175895.1_ASM17589v1 | ||
| CDS | 2300 | ||
| Genes | 2357 | ||
| mRNA | 0 | ||
| misc RNA | 4 | ||
| rRNA | 3 | ||
| tRNA | 49 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | % | ||
| CheckM Completeness | 96.94 % | ||
| CheckM Contamination | 1.6 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | Ambiguous [HOMD FTP] | ||
| Pangenomes |
1)
OpenAnvi`o (Interactive)
OpenSVG (Preview)
2) OpenAnvi`o (Interactive) OpenSVG (Preview) |
||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM17589v1 |
| GenBank Assembly Accession | GCA_000175895.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_000175895.1 [NCBI] |
| BioSample | SAMN00001903 [NCBI] |
| BioProject | PRJNA34095 [NCBI] |
| Submitter | J. Craig Venter Institute |
| Submission Date | 2009-02-19T09:43:24.030 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | ACYH01 |
| NCBI TaxID | 596324 |
| Isolation Source | missing |
| Geo Location | not determined |
