Genome Meta Information: Capnocytophaga ochracea F0287 (GCA_000183985.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_000183985.1 | ||
| HOMD Taxon-ID | HMT-0700 | ||
| Species Name (in use by HOMD) | Capnocytophaga ochracea | ||
| Organism Name (as deposited) | HMT-700 Capnocytophaga ochracea F0287 | ||
| Strain or Isolate | F0287 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Capnocytophaga; s__Capnocytophaga ochracea |
||
| Sequencing Technology | 454 | ||
| Genome Coverage | 34.5 | ||
| Contigs |
|
||
| Total Sequence Length | 2,663,545 (bp) | ||
| GC Percentage | 40.1 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/183/985/GCA_000183985.1_ASM18398v1 | ||
| CDS | 2202 | ||
| Genes | 2256 | ||
| mRNA | 2256 | ||
| misc RNA | 10 | ||
| rRNA | 3 | ||
| tRNA | 40 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 96.23 % | ||
| CheckM Completeness | 97.21 % | ||
| CheckM Contamination | 0.6 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | Ambiguous [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM18398v1 |
| GenBank Assembly Accession | GCA_000183985.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_000183985.1 [NCBI] |
| BioSample | SAMN00215988 [NCBI] |
| BioProject | PRJNA51493 [NCBI] |
| Submitter | Baylor College of Medicine |
| Submission Date | 2011-02-15T14:26:03.843 |
| Assembly Method | |
| Assembly Level | Scaffold |
| Sequencing Status | |
| WGS Project | AEOH01 |
| NCBI TaxID | 873517 |
| Isolation Source | oral cavity |
| Geo Location | not determined |
