Genome Meta Information: Variovorax paradoxus EPS (GCA_000184745.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_000184745.1 | ||
| HOMD Taxon-ID | HMT-0717 | ||
| Species Name (in use by HOMD) | Variovorax paradoxus | ||
| Organism Name (as deposited) | HMT-717 Variovorax paradoxus EPS | ||
| Strain or Isolate | EPS | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Variovorax; s__Variovorax paradoxus_C |
||
| Sequencing Technology | 454, Illumina | ||
| Genome Coverage | 30 | ||
| Contigs |
|
||
| Total Sequence Length | 6,550,056 (bp) | ||
| GC Percentage | 66.48 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/184/745/GCA_000184745.1_ASM18474v1 | ||
| CDS | 5983 | ||
| Genes | 6103 | ||
| mRNA | 6103 | ||
| misc RNA | 40 | ||
| rRNA | 6 | ||
| tRNA | 73 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 87.75 % | ||
| CheckM Completeness | 99.67 % | ||
| CheckM Contamination | 0.84 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM18474v1 |
| GenBank Assembly Accession | GCA_000184745.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_000184745.1 [NCBI] |
| BioSample | SAMN00149467 [NCBI] |
| BioProject | PRJNA43457 [NCBI] |
| Submitter | US DOE Joint Genome Institute |
| Submission Date | 2011-08-24T11:41:08.710 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 595537 |
| Isolation Source | |
| Geo Location | Missing |
