Genome Meta Information: Streptococcus oralis ATCC 49296 (GCA_000185265.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_000185265.1 | ||
| HOMD Taxon-ID | HMT-0707 | ||
| Species Name (in use by HOMD) | Streptococcus oralis | ||
| Organism Name (as deposited) | HMT-707 Streptococcus oralis subsp. oralis ATCC 49296 | ||
| Strain or Isolate | ATCC 49296 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus; s__Streptococcus oralis_BC |
||
| Sequencing Technology | 454 | ||
| Genome Coverage | 42.5 | ||
| Contigs |
|
||
| Total Sequence Length | 2,068,336 (bp) | ||
| GC Percentage | 41.55 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/185/265/GCA_000185265.1_ASM18526v1 | ||
| CDS | 1964 | ||
| Genes | 2040 | ||
| mRNA | 2040 | ||
| misc RNA | 40 | ||
| rRNA | 3 | ||
| tRNA | 32 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 94.92 % | ||
| CheckM Completeness | 99.73 % | ||
| CheckM Contamination | 0.82 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes |
1)
OpenAnvi`o (Interactive)
OpenSVG (Preview)
2) OpenAnvi`o (Interactive) OpenSVG (Preview) |
||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM18526v1 |
| GenBank Assembly Accession | GCA_000185265.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_000185265.1 [NCBI] |
| BioSample | SAMN00260261 [NCBI] |
| BioProject | PRJNA53005 [NCBI] |
| Submitter | Baylor College of Medicine |
| Submission Date | 2011-04-26T11:42:06.327 |
| Assembly Method | |
| Assembly Level | Scaffold |
| Sequencing Status | |
| WGS Project | AEPO01 |
| NCBI TaxID | 888049 |
| Isolation Source | oral cavity |
| Geo Location | not determined |
