Genome Meta Information: Capnocytophaga sp. HMT-338 F0234 (GCA_000192225.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_000192225.1 | ||
| HOMD Taxon-ID | HMT-0338 | ||
| Species Name (in use by HOMD) | Capnocytophaga sp. HMT-338 | ||
| Organism Name (as deposited) | HMT-338 Capnocytophaga sp. HMT-338 F0234 | ||
| Strain or Isolate | F0234 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Capnocytophaga; s__Capnocytophaga sp000192225 |
||
| Sequencing Technology | 454 | ||
| Genome Coverage | 37.975 | ||
| Contigs |
|
||
| Total Sequence Length | 2,548,422 (bp) | ||
| GC Percentage | 38.4 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/192/225/GCA_000192225.1_ASM19222v1 | ||
| CDS | 2335 | ||
| Genes | 2391 | ||
| mRNA | 2391 | ||
| misc RNA | 7 | ||
| rRNA | 3 | ||
| tRNA | 45 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | % | ||
| CheckM Completeness | 99.45 % | ||
| CheckM Contamination | 0 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM19222v1 |
| GenBank Assembly Accession | GCA_000192225.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_000192225.1 [NCBI] |
| BioSample | SAMN00253971 [NCBI] |
| BioProject | PRJNA53023 [NCBI] |
| Submitter | Baylor College of Medicine |
| Submission Date | 2011-03-29T15:32:24.640 |
| Assembly Method | |
| Assembly Level | Scaffold |
| Sequencing Status | |
| WGS Project | AEXX01 |
| NCBI TaxID | 888059 |
| Isolation Source | |
| Geo Location | not determined |
