Genome Meta Information: Bifidobacterium longum JCM 1217 (GCA_000196555.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_000196555.1 | ||
| HOMD Taxon-ID | HMT-0862 | ||
| Species Name (in use by HOMD) | Bifidobacterium longum | ||
| Organism Name (as deposited) | HMT-862 Bifidobacterium longum JCM 1217 | ||
| Strain or Isolate | JCM 1217 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Bifidobacteriaceae;g__Bifidobacterium; s__Bifidobacterium longum |
||
| Sequencing Technology | |||
| Genome Coverage | |||
| Contigs |
|
||
| Total Sequence Length | 2,385,164 (bp) | ||
| GC Percentage | 60.33 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/196/555/GCA_000196555.1_ASM19655v1 | ||
| CDS | 1946 | ||
| Genes | 2045 | ||
| mRNA | 2045 | ||
| misc RNA | 13 | ||
| rRNA | 8 | ||
| tRNA | 77 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 99.99 % | ||
| CheckM Completeness | 98.91 % | ||
| CheckM Contamination | 0.16 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM19655v1 |
| GenBank Assembly Accession | GCA_000196555.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_000196555.1 [NCBI] |
| BioSample | SAMD00060951 [NCBI] |
| BioProject | PRJDA32047 [NCBI] |
| Submitter | University of Tokyo, Graduate School of Frontier Sciences |
| Submission Date | 2016-09-28T01:00:51.846 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 565042 |
| Isolation Source | |
| Geo Location | |
