Genome Meta Information: Capnocytophaga leadbetteri F0087 (GCA_000213295.2)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_000213295.2 | ||
| HOMD Taxon-ID | HMT-0329 | ||
| Species Name (in use by HOMD) | Capnocytophaga leadbetteri | ||
| Organism Name (as deposited) | HMT-329 Capnocytophaga leadbetteri F0087 | ||
| Strain or Isolate | F0087 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Capnocytophaga; s__Capnocytophaga leadbetteri_A |
||
| Sequencing Technology | Illumina | ||
| Genome Coverage | 76.1 | ||
| Contigs |
|
||
| Total Sequence Length | 2,536,778 (bp) | ||
| GC Percentage | 41.94 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/213/295/GCA_000213295.2_ASM21329v2 | ||
| CDS | 2152 | ||
| Genes | 2197 | ||
| mRNA | 2197 | ||
| misc RNA | 9 | ||
| rRNA | 0 | ||
| tRNA | 35 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | % | ||
| CheckM Completeness | 97.76 % | ||
| CheckM Contamination | 0.91 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | Ambiguous [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM21329v2 |
| GenBank Assembly Accession | GCA_000213295.2 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_000213295.2 [NCBI] |
| BioSample | SAMN00189097 [NCBI] |
| BioProject | PRJNA43127 [NCBI] |
| Submitter | Washington University Genome Center |
| Submission Date | 2010-12-23T11:26:04.033 |
| Assembly Method | |
| Assembly Level | Scaffold |
| Sequencing Status | |
| WGS Project | AFHP02 |
| NCBI TaxID | 706436 |
| Isolation Source | oral cavity |
| Geo Location | not determined |
