Genome Meta Information: Delftia acidovorans Cs1-4 (GCA_000214395.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_000214395.1 | ||
| HOMD Taxon-ID | HMT-0023 | ||
| Species Name (in use by HOMD) | Delftia acidovorans | ||
| Organism Name (as deposited) | HMT-023 Delftia acidovorans Cs1-4 | ||
| Strain or Isolate | Cs1-4 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Comamonas; s__Comamonas acidovorans |
||
| Sequencing Technology | 454/Illumina | ||
| Genome Coverage | 30 | ||
| Contigs |
|
||
| Total Sequence Length | 6,685,842 (bp) | ||
| GC Percentage | 66.72 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/214/395/GCA_000214395.1_ASM21439v1 | ||
| CDS | 5900 | ||
| Genes | 6095 | ||
| mRNA | 6095 | ||
| misc RNA | 91 | ||
| rRNA | 15 | ||
| tRNA | 88 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | % | ||
| CheckM Completeness | 99.8 % | ||
| CheckM Contamination | 0.39 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM21439v1 |
| GenBank Assembly Accession | GCA_000214395.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_000214395.1 [NCBI] |
| BioSample | SAMN00713625 [NCBI] |
| BioProject | PRJNA46303 [NCBI] |
| Submitter | US DOE Joint Genome Institute |
| Submission Date | 2011-08-24T11:41:15.183 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 742013 |
| Isolation Source | PAH-contaminated soil |
| Geo Location | USA |
