Genome Meta Information: Streptococcus infantis X (GCA_000223335.2)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_000223335.2 | ||
| HOMD Taxon-ID | HMT-0638 | ||
| Species Name (in use by HOMD) | Streptococcus infantis | ||
| Organism Name (as deposited) | HMT-638 Streptococcus infantis clade-638 X | ||
| Strain or Isolate | X | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus; s__Streptococcus infantis_M |
||
| Sequencing Technology | 454 | ||
| Genome Coverage | 16.75 | ||
| Contigs |
|
||
| Total Sequence Length | 1,869,505 (bp) | ||
| GC Percentage | 39.57 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/223/335/GCA_000223335.2_ASM22333v2 | ||
| CDS | 1909 | ||
| Genes | 2014 | ||
| mRNA | 0 | ||
| misc RNA | 33 | ||
| rRNA | 18 | ||
| tRNA | 53 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 94.66 % | ||
| CheckM Completeness | 92.2 % | ||
| CheckM Contamination | 0.38 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes |
1)
OpenAnvi`o (Interactive)
OpenSVG (Preview)
2) OpenAnvi`o (Interactive) OpenSVG (Preview) |
||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM22333v2 |
| GenBank Assembly Accession | GCA_000223335.2 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_000223335.1 [NCBI] |
| BioSample | SAMN00255230 [NCBI] |
| BioProject | PRJNA64693 [NCBI] |
| Submitter | J. Craig Venter Institute |
| Submission Date | 2011-04-07T16:01:08.920 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | AFUQ01 |
| NCBI TaxID | 997830 |
| Isolation Source | |
| Geo Location | not determined |
