Genome Meta Information: Streptococcus salivarius M18 (GCA_000225385.2)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_000225385.2 | ||
| HOMD Taxon-ID | HMT-0755 | ||
| Species Name (in use by HOMD) | Streptococcus salivarius | ||
| Organism Name (as deposited) | HMT-755 Streptococcus salivarius M18 | ||
| Strain or Isolate | M18 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus; s__Streptococcus salivarius_D |
||
| Sequencing Technology | Roche 454 GS-FLX; Sanger (ABI 3730) | ||
| Genome Coverage | 18 | ||
| Contigs |
|
||
| Total Sequence Length | 2,325,981 (bp) | ||
| GC Percentage | 39.44 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/225/385/GCA_000225385.2_ASM22538v2 | ||
| CDS | 2111 | ||
| Genes | 2238 | ||
| mRNA | 2238 | ||
| misc RNA | 40 | ||
| rRNA | 18 | ||
| tRNA | 68 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 95.91 % | ||
| CheckM Completeness | 97.85 % | ||
| CheckM Contamination | 1.53 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM22538v2 |
| GenBank Assembly Accession | GCA_000225385.2 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_000225385.1 [NCBI] |
| BioSample | SAMN02471912 [NCBI] |
| BioProject | PRJNA71499 [NCBI] |
| Submitter | University of Otago |
| Submission Date | 2013-12-19T13:43:42.537 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | AGBV01 |
| NCBI TaxID | 1074494 |
| Isolation Source | oral swab from healthy volunteer |
| Geo Location | New Zealand:Dunedin |
