Genome Meta Information: Aggregatibacter aphrophilus ATCC 33389 (GCA_000226495.3)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_000226495.3 | ||
| HOMD Taxon-ID | HMT-545 | ||
| Species Name (in use by HOMD) | Aggregatibacter aphrophilus | ||
| Organism Name (as deposited) | HMT-545 Aggregatibacter aphrophilus ATCC 33389 | ||
| Strain or Isolate | ATCC 33389 | ||
| GTDB (V) Taxonomy |
d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Aggregatibacter; s__Aggregatibacter aphrophilus |
||
| Sequencing Technology | Illumina MiSeq | ||
| Genome Coverage | 32.6x | ||
| Contigs |
|
||
| Total Sequence Length | 2,267,213 (bp) | ||
| GC Percentage | 42.18 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/226/495/GCA_000226495.3_ASM22649v3 | ||
| CDS | 2120 | ||
| Genes | 2233 | ||
| mRNA | 2233 | ||
| misc RNA | 58 | ||
| rRNA | 4 | ||
| tRNA | 50 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 99.99 % | ||
| CheckM Completeness | 0 % | ||
| CheckM Contamination | 0 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM22649v3 |
| GenBank Assembly Accession | GCA_000226495.3 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_000226495.2 [NCBI] |
| BioSample | SAMN02471993 [NCBI] |
| BioProject | PRJNA62995 [NCBI] |
| Submitter | Bumgarner laboratory, Department of Microbiology, University of Washington |
| Submission Date | 2013-12-19T13:52:15.753 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | AEWB02 |
| NCBI TaxID | 985008 |
| Isolation Source | oral cavity |
| Geo Location | USA |
