Genome Meta Information: Streptococcus pneumoniae SV36 (GCA_000256645.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_000256645.1 | ||
| HOMD Taxon-ID | HMT-0734 | ||
| Species Name (in use by HOMD) | Streptococcus pneumoniae | ||
| Organism Name (as deposited) | HMT-734 Streptococcus pneumoniae SV36 | ||
| Strain or Isolate | SV36 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus; s__Streptococcus pneumoniae |
||
| Sequencing Technology | 454 Life Sciences FLX | ||
| Genome Coverage | 25.9 | ||
| Contigs |
|
||
| Total Sequence Length | 2,156,372 (bp) | ||
| GC Percentage | 39.48 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/256/645/GCA_000256645.1_ASM25664v1 | ||
| CDS | 2128 | ||
| Genes | 2287 | ||
| mRNA | 2287 | ||
| misc RNA | 87 | ||
| rRNA | 12 | ||
| tRNA | 59 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 98.73 % | ||
| CheckM Completeness | 97.91 % | ||
| CheckM Contamination | 0.94 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM25664v1 |
| GenBank Assembly Accession | GCA_000256645.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_000256645.1 [NCBI] |
| BioSample | SAMN02393735 [NCBI] |
| BioProject | PRJNA28499 [NCBI] |
| Submitter | Center for Genomic Sciences |
| Submission Date | 2013-11-05T15:57:08.423 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | ADNO01 |
| NCBI TaxID | 497739 |
| Isolation Source | nasopharynx |
| Geo Location | USA: AIDS clinic of St. Vincen |
