Genome Meta Information: Streptococcus intermedius SK54 (GCA_000258445.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_000258445.1 | ||
| HOMD Taxon-ID | HMT-0644 | ||
| Species Name (in use by HOMD) | Streptococcus intermedius | ||
| Organism Name (as deposited) | HMT-644 Streptococcus intermedius SK54 | ||
| Strain or Isolate | SK54 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus; s__Streptococcus intermedius |
||
| Sequencing Technology | Illumina | ||
| Genome Coverage | 27 | ||
| Contigs |
|
||
| Total Sequence Length | 1,910,718 (bp) | ||
| GC Percentage | 37.58 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/258/445/GCA_000258445.1_SintermediusSK54v1.0 | ||
| CDS | 1830 | ||
| Genes | 1895 | ||
| mRNA | 1895 | ||
| misc RNA | 32 | ||
| rRNA | 3 | ||
| tRNA | 29 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 99.99 % | ||
| CheckM Completeness | 99.45 % | ||
| CheckM Contamination | 0.14 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | SintermediusSK54v1.0 |
| GenBank Assembly Accession | GCA_000258445.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_000258445.1 [NCBI] |
| BioSample | SAMN00761834 [NCBI] |
| BioProject | PRJNA75155 [NCBI] |
| Submitter | J. Craig Venter Institute |
| Submission Date | 2011-12-05T15:30:04.703 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | AJKN01 |
| NCBI TaxID | 1095731 |
| Isolation Source | |
| Geo Location | not determined |
