Taxon Table | Genome Table
Genome Meta Information:
Helicobacter
pylori
CCUG 17874 (GCA_000258845.1)
| HOMD Genome-ID |
GCA_000258845.1
|
| HOMD Taxon-ID |
HMT-0812
|
| Species Name (in use by HOMD) |
Helicobacter pylori
|
| Organism Name (as deposited) |
HMT-812 Helicobacter pylori CCUG 17874
|
| Strain or Isolate |
CCUG 17874
|
GTDB (V226)
Taxonomy |
d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Helicobacteraceae;g__Helicobacter;
s__Helicobacter pylori |
| Sequencing Technology |
Illumina GA IIx
|
| Genome Coverage |
120
|
| Contigs |
Number of Contigs: 163
|
[Open
in Genome Viewer]
[Show
Sequence]
[Linkout to
NCBI]
|
|
| Total Sequence Length |
1,600,513 (bp) |
| GC Percentage |
39.0
|
| MAG |
|
| NCBI FTP URL |
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/258/845/GCA_000258845.1_ASM25884v1
|
| CDS |
1520
|
| Genes |
1570
|
| mRNA |
1570
|
| misc RNA |
11
|
| rRNA |
2
|
| tRNA |
36
|
| tmRNA |
1
|
| ANI (Average Nucluotide Identity) |
99.92 %
|
| CheckM Completeness |
96.42 %
|
| CheckM Contamination |
0.97 %
|
| CheckM2 Completeness |
0 %
|
| CheckM2 Contamination |
0 %
|
Difference
between
CheckM and CheckM2
Completeness |
200.0 %
|
| CRISPR-cas |
No Available
Data |
| Pangenomes |
1)
OpenAnvi`o (Interactive)
OpenSVG (Preview)
|
| Genome Assembly Name |
ASM25884v1
|
| GenBank Assembly Accession |
GCA_000258845.1
[NCBI]
[GTDB]
|
| RefSeq Assembly Accession |
GCF_000258845.1
[NCBI]
|
| BioSample |
SAMN02472263
[NCBI]
|
| BioProject |
PRJNA76569
[NCBI]
|
| Submitter |
Microbiology Dept, University College Cork
|
| Submission Date |
2013-12-19T14:14:26.770
|
| Assembly Method |
|
| Assembly Level |
Contig
|
| Sequencing Status |
|
| WGS
Project |
AIHX01
|
| NCBI TaxID |
102618
|
| Isolation Source |
gastric antrum sample from patient
|
| Geo Location |
Australia
|
