Genome Meta Information: Streptococcus infantis ATCC 700779 (GCA_000260755.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_000260755.1 | ||
| HOMD Taxon-ID | HMT-0638 | ||
| Species Name (in use by HOMD) | Streptococcus infantis | ||
| Organism Name (as deposited) | HMT-638 Streptococcus infantis clade-638 ATCC 700779 | ||
| Strain or Isolate | ATCC 700779 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus; s__Streptococcus infantis |
||
| Sequencing Technology | Illumina | ||
| Genome Coverage | 274 | ||
| Contigs |
|
||
| Total Sequence Length | 1,857,230 (bp) | ||
| GC Percentage | 39.0 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/260/755/GCA_000260755.1_SinfantisSK959v1.0 | ||
| CDS | 1830 | ||
| Genes | 1909 | ||
| mRNA | 0 | ||
| misc RNA | 35 | ||
| rRNA | 2 | ||
| tRNA | 41 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 99.98 % | ||
| CheckM Completeness | 99.32 % | ||
| CheckM Contamination | 0.48 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes |
1)
OpenAnvi`o (Interactive)
OpenSVG (Preview)
2) OpenAnvi`o (Interactive) OpenSVG (Preview) |
||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | SinfantisSK959v1.0 |
| GenBank Assembly Accession | GCA_000260755.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_000260755.1 [NCBI] |
| BioSample | SAMN00761850 [NCBI] |
| BioProject | PRJNA158721 [NCBI] |
| Submitter | J. Craig Venter Institute |
| Submission Date | 2011-12-05T15:40:04.937 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | AJTA01 |
| NCBI TaxID | 889204 |
| Isolation Source | |
| Geo Location | not determined |
