Genome Meta Information: Haemophilus parahaemolyticus HK385 (GCA_000262265.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_000262265.1 | ||
| HOMD Taxon-ID | HMT-0945 | ||
| Species Name (in use by HOMD) | Haemophilus parahaemolyticus | ||
| Organism Name (as deposited) | HMT-945 Haemophilus parahaemolyticus HK385 | ||
| Strain or Isolate | HK385 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus_A; s__Haemophilus_A parahaemolyticus |
||
| Sequencing Technology | Illumina | ||
| Genome Coverage | 28.28 | ||
| Contigs |
|
||
| Total Sequence Length | 2,030,584 (bp) | ||
| GC Percentage | 40.15 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/262/265/GCA_000262265.1_ASM26226v1 | ||
| CDS | 1932 | ||
| Genes | 1998 | ||
| mRNA | 1998 | ||
| misc RNA | 26 | ||
| rRNA | 3 | ||
| tRNA | 36 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 99.99 % | ||
| CheckM Completeness | 99.36 % | ||
| CheckM Contamination | 0.21 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM26226v1 |
| GenBank Assembly Accession | GCA_000262265.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_000262265.1 [NCBI] |
| BioSample | SAMN00761805 [NCBI] |
| BioProject | PRJNA75139 [NCBI] |
| Submitter | J. Craig Venter Institute |
| Submission Date | 2011-12-05T14:39:06.167 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | AJSW01 |
| NCBI TaxID | 1095744 |
| Isolation Source | |
| Geo Location | not determined |
