Genome Meta Information: Helicobacter pylori Shi112 (GCA_000277405.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_000277405.1 | ||
| HOMD Taxon-ID | HMT-0812 | ||
| Species Name (in use by HOMD) | Helicobacter pylori | ||
| Organism Name (as deposited) | HMT-812 Helicobacter pylori Shi112 | ||
| Strain or Isolate | Shi112 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Helicobacteraceae;g__Helicobacter; s__Helicobacter pylori_C |
||
| Sequencing Technology | |||
| Genome Coverage | |||
| Contigs |
|
||
| Total Sequence Length | 1,663,456 (bp) | ||
| GC Percentage | 38.77 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/277/405/GCA_000277405.1_ASM27740v1 | ||
| CDS | 1558 | ||
| Genes | 1613 | ||
| mRNA | 1613 | ||
| misc RNA | 13 | ||
| rRNA | 4 | ||
| tRNA | 37 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 95.84 % | ||
| CheckM Completeness | 98.31 % | ||
| CheckM Contamination | 0.04 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM27740v1 |
| GenBank Assembly Accession | GCA_000277405.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_000277405.1 [NCBI] |
| BioSample | SAMN02603194 [NCBI] |
| BioProject | PRJNA94347 [NCBI] |
| Submitter | Dept. Molec. Microbiology, Washington University Medical School in Saint Louis |
| Submission Date | 2014-01-30T11:19:39.890 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 1163740 |
| Isolation Source | gastric antrum of Amerindian resident |
| Geo Location | Peru: Amazonian viillage of Sh |
