Genome Meta Information: Streptococcus infantis SPAR10 (GCA_000279535.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_000279535.1 | ||
| HOMD Taxon-ID | HMT-0638 | ||
| Species Name (in use by HOMD) | Streptococcus infantis | ||
| Organism Name (as deposited) | HMT-638 Streptococcus infantis clade-638 SPAR10 | ||
| Strain or Isolate | SPAR10 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus; s__Streptococcus infantis_I |
||
| Sequencing Technology | 454 GS FLX Titanium | ||
| Genome Coverage | 46 | ||
| Contigs |
|
||
| Total Sequence Length | 1,758,646 (bp) | ||
| GC Percentage | 39.39 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/279/535/GCA_000279535.1_ASM27953v1 | ||
| CDS | 1666 | ||
| Genes | 1779 | ||
| mRNA | 0 | ||
| misc RNA | 38 | ||
| rRNA | 13 | ||
| tRNA | 61 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 94.61 % | ||
| CheckM Completeness | 96.52 % | ||
| CheckM Contamination | 0.64 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes |
1)
OpenAnvi`o (Interactive)
OpenSVG (Preview)
2) OpenAnvi`o (Interactive) OpenSVG (Preview) |
||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM27953v1 |
| GenBank Assembly Accession | GCA_000279535.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_000279535.1 [NCBI] |
| BioSample | SAMN00811524 [NCBI] |
| BioProject | PRJNA89127 [NCBI] |
| Submitter | Institute for Genome Sciences |
| Submission Date | 2012-03-13T14:09:03.160 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | ALCH01 |
| NCBI TaxID | 1159208 |
| Isolation Source | |
| Geo Location | |
