Genome Meta Information: Streptococcus mutans LJ23 (GCA_000284575.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_000284575.1 | ||
| HOMD Taxon-ID | HMT-0686 | ||
| Species Name (in use by HOMD) | Streptococcus mutans | ||
| Organism Name (as deposited) | HMT-686 Streptococcus mutans LJ23 | ||
| Strain or Isolate | LJ23 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus; s__Streptococcus mutans |
||
| Sequencing Technology | Sanger; Roche 454 | ||
| Genome Coverage | 88 | ||
| Contigs |
|
||
| Total Sequence Length | 2,015,626 (bp) | ||
| GC Percentage | 37.05 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/284/575/GCA_000284575.1_ASM28457v1 | ||
| CDS | 1870 | ||
| Genes | 1985 | ||
| mRNA | 1985 | ||
| misc RNA | 34 | ||
| rRNA | 15 | ||
| tRNA | 65 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 99.09 % | ||
| CheckM Completeness | 96.8 % | ||
| CheckM Contamination | 0.86 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 2 Contigs [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM28457v1 |
| GenBank Assembly Accession | GCA_000284575.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_000284575.1 [NCBI] |
| BioSample | SAMD00061051 [NCBI] |
| BioProject | PRJDB67 [NCBI] |
| Submitter | Tokyo Medical and Dental University Graduate School of Medical and Dental Sciences |
| Submission Date | 2016-09-28T01:02:07.990 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 1155071 |
| Isolation Source | |
| Geo Location | |
