Genome Meta Information: Haemophilus sputorum HK 2154 (GCA_000287615.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_000287615.1 | ||
| HOMD Taxon-ID | HMT-0944 | ||
| Species Name (in use by HOMD) | Haemophilus sputorum | ||
| Organism Name (as deposited) | HMT-944 Haemophilus sputorum HK 2154 | ||
| Strain or Isolate | HK 2154 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus_A; s__Haemophilus_A sputorum |
||
| Sequencing Technology | Illumina | ||
| Genome Coverage | 29 | ||
| Contigs |
|
||
| Total Sequence Length | 2,080,113 (bp) | ||
| GC Percentage | 39.5 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/287/615/GCA_000287615.1_HsputHK2154v1.0 | ||
| CDS | 1957 | ||
| Genes | 2047 | ||
| mRNA | 2047 | ||
| misc RNA | 36 | ||
| rRNA | 14 | ||
| tRNA | 39 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 99.07 % | ||
| CheckM Completeness | 99.66 % | ||
| CheckM Contamination | 0 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | Ambiguous [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | HsputHK2154v1.0 |
| GenBank Assembly Accession | GCA_000287615.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_000287615.1 [NCBI] |
| BioSample | SAMN00829138 [NCBI] |
| BioProject | PRJNA89619 [NCBI] |
| Submitter | JCVI |
| Submission Date | 2012-03-20T15:53:02.147 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | ALJP01 |
| NCBI TaxID | 1078483 |
| Isolation Source | |
| Geo Location | not determined |
