Genome Meta Information: Capnocytophaga granulosa CM59 (GCA_000293175.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_000293175.1 | ||
| HOMD Taxon-ID | HMT-0325 | ||
| Species Name (in use by HOMD) | Capnocytophaga granulosa | ||
| Organism Name (as deposited) | HMT-325 Capnocytophaga granulosa CM59 | ||
| Strain or Isolate | CM59 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Capnocytophaga; s__Capnocytophaga granulosa |
||
| Sequencing Technology | Illumina | ||
| Genome Coverage | 32 | ||
| Contigs |
|
||
| Total Sequence Length | 2,785,060 (bp) | ||
| GC Percentage | 41.33 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/293/175/GCA_000293175.1_CspCM59v1.0 | ||
| CDS | 2585 | ||
| Genes | 2640 | ||
| mRNA | 2640 | ||
| misc RNA | 9 | ||
| rRNA | 4 | ||
| tRNA | 41 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | % | ||
| CheckM Completeness | 99.06 % | ||
| CheckM Contamination | 0.29 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | Ambiguous [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | CspCM59v1.0 |
| GenBank Assembly Accession | GCA_000293175.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_000293175.1 [NCBI] |
| BioSample | SAMN00828795 [NCBI] |
| BioProject | PRJNA78587 [NCBI] |
| Submitter | J. Craig Venter Institute |
| Submission Date | 2012-03-15T11:55:01.800 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | ALNN01 |
| NCBI TaxID | 936370 |
| Isolation Source | |
| Geo Location | not determined |
