Genome Meta Information: Streptococcus intermedius JTH08 (GCA_000306805.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_000306805.1 | ||
| HOMD Taxon-ID | HMT-0644 | ||
| Species Name (in use by HOMD) | Streptococcus intermedius | ||
| Organism Name (as deposited) | HMT-644 Streptococcus intermedius JTH08 | ||
| Strain or Isolate | JTH08 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus; s__Streptococcus intermedius |
||
| Sequencing Technology | |||
| Genome Coverage | |||
| Contigs |
|
||
| Total Sequence Length | 1,933,610 (bp) | ||
| GC Percentage | 37.71 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/306/805/GCA_000306805.1_ASM30680v1 | ||
| CDS | 1840 | ||
| Genes | 1953 | ||
| mRNA | 1953 | ||
| misc RNA | 32 | ||
| rRNA | 12 | ||
| tRNA | 68 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 99.99 % | ||
| CheckM Completeness | 99.45 % | ||
| CheckM Contamination | 0.14 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM30680v1 |
| GenBank Assembly Accession | GCA_000306805.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_000306805.1 [NCBI] |
| BioSample | SAMD00060960 [NCBI] |
| BioProject | PRJDA33443 [NCBI] |
| Submitter | Juntendo University School of Medicine |
| Submission Date | 2016-09-28T01:00:57.858 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 591365 |
| Isolation Source | |
| Geo Location | |
