Genome Meta Information: Campylobacter showae CSUNSWCD (GCA_000313615.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_000313615.1 | ||
| HOMD Taxon-ID | HMT-0763 | ||
| Species Name (in use by HOMD) | Campylobacter showae | ||
| Organism Name (as deposited) | HMT-763 Campylobacter showae CSUNSWCD | ||
| Strain or Isolate | CSUNSWCD | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A; s__Campylobacter_A showae_A |
||
| Sequencing Technology | Illumina HiSeq | ||
| Genome Coverage | 800 | ||
| Contigs |
|
||
| Total Sequence Length | 2,125,173 (bp) | ||
| GC Percentage | 45.13 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/313/615/GCA_000313615.1_Velvet_assembly_of_Campylobacter_showae_CSUNSWCD | ||
| CDS | 2136 | ||
| Genes | 2183 | ||
| mRNA | 2183 | ||
| misc RNA | 5 | ||
| rRNA | 2 | ||
| tRNA | 39 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 92.21 % | ||
| CheckM Completeness | 98.23 % | ||
| CheckM Contamination | 1.08 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | Velvet assembly of Campylobac |
| GenBank Assembly Accession | GCA_000313615.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_000313615.1 [NCBI] |
| BioSample | SAMN01806160 [NCBI] |
| BioProject | PRJNA177777 [NCBI] |
| Submitter | University of New South Wales |
| Submission Date | 2012-11-12T09:06:20.957 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | AMZQ01 |
| NCBI TaxID | 1244083 |
| Isolation Source | |
| Geo Location | |
