Genome Meta Information: Streptococcus intermedius BA1 (GCA_000313655.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_000313655.1 | ||
| HOMD Taxon-ID | HMT-0644 | ||
| Species Name (in use by HOMD) | Streptococcus intermedius | ||
| Organism Name (as deposited) | HMT-644 Streptococcus intermedius BA1 | ||
| Strain or Isolate | BA1 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus; s__Streptococcus intermedius |
||
| Sequencing Technology | 454 FLX Titanium; PacBio RS | ||
| Genome Coverage | 30 | ||
| Contigs |
|
||
| Total Sequence Length | 1,965,880 (bp) | ||
| GC Percentage | 37.73 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/313/655/GCA_000313655.1_contig | ||
| CDS | 1931 | ||
| Genes | 2043 | ||
| mRNA | 2043 | ||
| misc RNA | 37 | ||
| rRNA | 10 | ||
| tRNA | 64 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 98.4 % | ||
| CheckM Completeness | 92.43 % | ||
| CheckM Contamination | 1.9 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | contig |
| GenBank Assembly Accession | GCA_000313655.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_000313655.1 [NCBI] |
| BioSample | SAMN02222948 [NCBI] |
| BioProject | PRJNA178554 [NCBI] |
| Submitter | Institute for Genome Sciences |
| Submission Date | 2013-07-02T12:05:35.430 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | ANFT01 |
| NCBI TaxID | 1248420 |
| Isolation Source | |
| Geo Location | |
