Genome Meta Information: Afipia broomeae ATCC 49717 (GCA_000314675.2)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_000314675.2 | ||
| HOMD Taxon-ID | HMT-559 | ||
| Species Name (in use by HOMD) | Afipia broomeae | ||
| Organism Name (as deposited) | HMT-559 Afipia broomeae ATCC 49717 | ||
| Strain or Isolate | ATCC 49717 | ||
| GTDB (V) Taxonomy |
d__Bacteria;p__Pseudomonadota;c__Alphaproteobacteria;o__Rhizobiales;f__Xanthobacteraceae;g__Afipia; s__Afipia broomeae |
||
| Sequencing Technology | Illumina | ||
| Genome Coverage | 110.0x | ||
| Contigs |
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| Total Sequence Length | 5,261,968 (bp) | ||
| GC Percentage | 61.35 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/314/675/GCA_000314675.2_Afip_broo_ATCC_49717_V1 | ||
| CDS | 5039 | ||
| Genes | 5129 | ||
| mRNA | 5129 | ||
| misc RNA | 32 | ||
| rRNA | 3 | ||
| tRNA | 54 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | % | ||
| CheckM Completeness | 99.68 % | ||
| CheckM Contamination | 0.63 % | ||
| CheckM2 Completeness | 99.99 % | ||
| CheckM2 Contamination | 1.16 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | Afip_broo_ATCC_49717_V1 |
| GenBank Assembly Accession | GCA_000314675.2 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_000314675.2 [NCBI] |
| BioSample | SAMN02596753 [NCBI] |
| BioProject | PRJNA52155 [NCBI] |
| Submitter | Broad Institute |
| Submission Date | 2014-01-27T09:48:49.440 |
| Assembly Method | |
| Assembly Level | Scaffold |
| Sequencing Status | |
| WGS Project | AGWX01 |
| NCBI TaxID | 883078 |
| Isolation Source | |
| Geo Location | |
