Genome Meta Information: Capnocytophaga ochracea F0488 (GCA_000318255.2)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_000318255.2 | ||
| HOMD Taxon-ID | HMT-0700 | ||
| Species Name (in use by HOMD) | Capnocytophaga ochracea | ||
| Organism Name (as deposited) | HMT-700 Capnocytophaga ochracea F0488 | ||
| Strain or Isolate | F0488 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Capnocytophaga; s__Capnocytophaga ochracea |
||
| Sequencing Technology | Illumina | ||
| Genome Coverage | 148 | ||
| Contigs |
|
||
| Total Sequence Length | 2,634,285 (bp) | ||
| GC Percentage | 39.51 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/318/255/GCA_000318255.2_ASM31825v2 | ||
| CDS | 2236 | ||
| Genes | 2282 | ||
| mRNA | 2282 | ||
| misc RNA | 7 | ||
| rRNA | 2 | ||
| tRNA | 36 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | % | ||
| CheckM Completeness | 99.94 % | ||
| CheckM Contamination | 0 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | Ambiguous [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM31825v2 |
| GenBank Assembly Accession | GCA_000318255.2 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_000318255.2 [NCBI] |
| BioSample | SAMN02436932 [NCBI] |
| BioProject | PRJNA80245 [NCBI] |
| Submitter | Washington University |
| Submission Date | 2013-12-04T15:04:01.970 |
| Assembly Method | |
| Assembly Level | Scaffold |
| Sequencing Status | |
| WGS Project | AMES01 |
| NCBI TaxID | 1127693 |
| Isolation Source | oral cavity |
| Geo Location | |
