Genome Meta Information: Treponema denticola SP33 (GCA_000338475.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_000338475.1 | ||
| HOMD Taxon-ID | HMT-0584 | ||
| Species Name (in use by HOMD) | Treponema denticola | ||
| Organism Name (as deposited) | HMT-584 Treponema denticola SP33 | ||
| Strain or Isolate | SP33 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Spirochaetota;c__Spirochaetia;o__Treponematales;f__Treponemataceae;g__Treponema_B; s__Treponema_B denticola_A |
||
| Sequencing Technology | Illumina | ||
| Genome Coverage | 200 | ||
| Contigs |
|
||
| Total Sequence Length | 2,933,485 (bp) | ||
| GC Percentage | 38.07 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/338/475/GCA_000338475.1_Trep_dent_SP33_V1 | ||
| CDS | 2704 | ||
| Genes | 2763 | ||
| mRNA | 2763 | ||
| misc RNA | 8 | ||
| rRNA | 6 | ||
| tRNA | 44 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 94.23 % | ||
| CheckM Completeness | 99.21 % | ||
| CheckM Contamination | 0.06 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | Trep_dent_SP33_V1 |
| GenBank Assembly Accession | GCA_000338475.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_000338475.1 [NCBI] |
| BioSample | SAMN02596725 [NCBI] |
| BioProject | PRJNA64925 [NCBI] |
| Submitter | Broad Institute |
| Submission Date | 2014-01-27T09:48:47.283 |
| Assembly Method | |
| Assembly Level | Scaffold |
| Sequencing Status | |
| WGS Project | AGDZ01 |
| NCBI TaxID | 999437 |
| Isolation Source | |
| Geo Location | |
