Taxon Table | Genome Table
Genome Meta Information:
Streptococcus
mutans
4VF1 (GCA_000339215.1)
| HOMD Genome-ID |
GCA_000339215.1
|
| HOMD Taxon-ID |
HMT-0686
|
| Species Name (in use by HOMD) |
Streptococcus mutans
|
| Organism Name (as deposited) |
HMT-686 Streptococcus mutans 4VF1
|
| Strain or Isolate |
4VF1
|
GTDB (V226)
Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;
s__Streptococcus mutans |
| Sequencing Technology |
Illumina GAII single end reads
|
| Genome Coverage |
50
|
| Contigs |
Number of Contigs: 127
|
[Open
in Genome Viewer]
[Show
Sequence]
[Linkout to
NCBI]
|
|
| Total Sequence Length |
2,008,731 (bp) |
| GC Percentage |
36.63
|
| MAG |
|
| NCBI FTP URL |
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/339/215/GCA_000339215.1_ASM33921v1
|
| CDS |
1838
|
| Genes |
1897
|
| mRNA |
1897
|
| misc RNA |
27
|
| rRNA |
3
|
| tRNA |
28
|
| tmRNA |
1
|
| ANI (Average Nucluotide Identity) |
98.94 %
|
| CheckM Completeness |
94.32 %
|
| CheckM Contamination |
2.15 %
|
| CheckM2 Completeness |
0 %
|
| CheckM2 Contamination |
0 %
|
Difference
between
CheckM and CheckM2
Completeness |
200.0 %
|
| CRISPR-cas |
No Available
Data |
| Pangenomes |
1)
OpenAnvi`o (Interactive)
OpenSVG (Preview)
|
| Genome Assembly Name |
ASM33921v1
|
| GenBank Assembly Accession |
GCA_000339215.1
[NCBI]
[GTDB]
|
| RefSeq Assembly Accession |
GCF_000339215.1
[NCBI]
|
| BioSample |
SAMN02429085
[NCBI]
|
| BioProject |
PRJNA49771
[NCBI]
|
| Submitter |
Cornell University
|
| Submission Date |
2013-12-02T10:55:32.507
|
| Assembly Method |
|
| Assembly Level |
Contig
|
| Sequencing Status |
|
| WGS
Project |
AHRQ01
|
| NCBI TaxID |
857146
|
| Isolation Source |
oral cavity
|
| Geo Location |
Brazil
|
