Genome Meta Information: Streptococcus mutans 5SM3 (GCA_000339275.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_000339275.1 | ||
| HOMD Taxon-ID | HMT-0686 | ||
| Species Name (in use by HOMD) | Streptococcus mutans | ||
| Organism Name (as deposited) | HMT-686 Streptococcus mutans 5SM3 | ||
| Strain or Isolate | 5SM3 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus; s__Streptococcus mutans |
||
| Sequencing Technology | Illumina GAII single end reads | ||
| Genome Coverage | 50 | ||
| Contigs |
|
||
| Total Sequence Length | 1,943,643 (bp) | ||
| GC Percentage | 36.83 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/339/275/GCA_000339275.1_ASM33927v1 | ||
| CDS | 1820 | ||
| Genes | 1881 | ||
| mRNA | 1881 | ||
| misc RNA | 27 | ||
| rRNA | 3 | ||
| tRNA | 30 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 99.12 % | ||
| CheckM Completeness | 96.24 % | ||
| CheckM Contamination | 0.73 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM33927v1 |
| GenBank Assembly Accession | GCA_000339275.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_000339275.1 [NCBI] |
| BioSample | SAMN02428985 [NCBI] |
| BioProject | PRJNA49779 [NCBI] |
| Submitter | Cornell University |
| Submission Date | 2013-12-02T10:55:28.633 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | AHRU01 |
| NCBI TaxID | 857142 |
| Isolation Source | oral cavity |
| Geo Location | Brazil |
