Taxon Table | Genome Table
Genome Meta Information:
Streptococcus
mutans
U2A (GCA_000339475.1)
| HOMD Genome-ID |
GCA_000339475.1
|
| HOMD Taxon-ID |
HMT-0686
|
| Species Name (in use by HOMD) |
Streptococcus mutans
|
| Organism Name (as deposited) |
HMT-686 Streptococcus mutans U2A
|
| Strain or Isolate |
U2A
|
GTDB (V226)
Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;
s__Streptococcus mutans |
| Sequencing Technology |
Illumina GAII single end reads
|
| Genome Coverage |
50
|
| Contigs |
Number of Contigs: 163
|
[Open
in Genome Viewer]
[Show
Sequence]
[Linkout to
NCBI]
|
|
| Total Sequence Length |
2,099,425 (bp) |
| GC Percentage |
36.79
|
| MAG |
|
| NCBI FTP URL |
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/339/475/GCA_000339475.1_ASM33947v1
|
| CDS |
1958
|
| Genes |
2018
|
| mRNA |
2018
|
| misc RNA |
27
|
| rRNA |
4
|
| tRNA |
28
|
| tmRNA |
1
|
| ANI (Average Nucluotide Identity) |
99.07 %
|
| CheckM Completeness |
97.71 %
|
| CheckM Contamination |
1.72 %
|
| CheckM2 Completeness |
0 %
|
| CheckM2 Contamination |
0 %
|
Difference
between
CheckM and CheckM2
Completeness |
200.0 %
|
| CRISPR-cas |
No Available
Data |
| Pangenomes |
1)
OpenAnvi`o (Interactive)
OpenSVG (Preview)
|
| Genome Assembly Name |
ASM33947v1
|
| GenBank Assembly Accession |
GCA_000339475.1
[NCBI]
[GTDB]
|
| RefSeq Assembly Accession |
GCF_000339475.1
[NCBI]
|
| BioSample |
SAMN02428977
[NCBI]
|
| BioProject |
PRJNA49831
[NCBI]
|
| Submitter |
Cornell University
|
| Submission Date |
2013-12-02T10:55:28.283
|
| Assembly Method |
|
| Assembly Level |
Contig
|
| Sequencing Status |
|
| WGS
Project |
AHSU01
|
| NCBI TaxID |
857116
|
| Isolation Source |
oral cavity
|
| Geo Location |
Turkey
|
